Include "other" variants for CADD to analyse multallelic indels

nf-core · May 6, 2024 · 8192e85 · 8192e85
1 parent f93c357
commit 8192e85
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/conf/modules/annotate_cadd.config b/conf/modules/annotate_cadd.config
@@ -21,7 +21,7 @@ process {
     }
 
     withName: '.*:ANNOTATE_CADD:BCFTOOLS_VIEW' {
-        ext.args   = { "--output-type z --types indels" }
+        ext.args   = { "--output-type z --types indels,other" }
         ext.prefix = { "${vcf.simpleName}_indels" }
     }