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Issues: nf-core/tools

[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
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Download: Fix support for Seqera Community Containers
#3179 opened Sep 24, 2024 by MatthiasZepper
Open 7
Renovate Dashboard 🤖
#2596 opened Dec 19, 2023 by renovate bot
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275 Open 841 Closed
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Issues list

Support double nesting in nf-schema or required parameters enhancement
#3437 opened Jan 31, 2025 by luisas
modules lint can't handle nested environment.yml files bug Something isn't working
#3436 opened Jan 31, 2025 by mashehu
Institutional configs are not included when NXF_OFFLINE is on bug Something isn't working
#3430 opened Jan 27, 2025 by Aratz
PULL_REQUEST_TEMPLATE.md fails files_unchanged linting test depending on local choice of default branch bug Something isn't working
#3423 opened Jan 24, 2025 by alexlyttle
Behaviour of lint check files_unchanged is different in 3.1.2 bug Something isn't working
#3422 opened Jan 24, 2025 by awgymer
False positive merge marker failures due to .venv directory bug Something isn't working
#3420 opened Jan 22, 2025 by heuermh
1
Too many redundant tests executed on dev to master release for pipelines bug Something isn't working enhancement pipeline-testing template nf-core pipeline/component template
#3400 opened Jan 15, 2025 by jfy133 3.3.0
1
7
adding zenodo_release to nf-core.yml does still produce a warning bug Something isn't working
#3398 opened Jan 15, 2025 by marrip
Schema: Support arrays schema
#3392 opened Jan 10, 2025 by ewels
nf-core pipelines sync overwrites newly generated .nf-core.yml content bug Something isn't working
#3391 opened Jan 9, 2025 by awgymer
RO-crate content appear in the nf-core lint warning if there is a TODO bug Something isn't working
#3387 opened Jan 8, 2025 by maxulysse 3.3.0
1
Add a way to tell the linter to ignore specified directories enhancement linting
#3385 opened Jan 7, 2025 by zachary-foster
1
nf-core pipelines download does not work with SSLError bug Something isn't working
#3375 opened Dec 25, 2024 by meng-hhh
Remove hyphens from pipeline names in Nextflow workflows enhancement
#3365 opened Dec 18, 2024 by adamrtalbot
12
modules lint --fix changes more entries in the meta.yml than expected bug Something isn't working
#3363 opened Dec 17, 2024 by famosab
nf-core pipelines rocrate does not know about the contributors field introduced in nextflow.config by Nextflow 24.10.0 bug Something isn't working
#3361 opened Dec 17, 2024 by charles-plessy
Add beautiful citation directions via CITATION.cff in template enhancement
#3360 opened Dec 13, 2024 by d4straub
8
Pipeline template: only run linting and precommit if only markdown files changed in a PR enhancement
#3352 opened Dec 12, 2024 by jfy133
1
Lint nf-test snapshots for the word "false" enhancement
#3346 opened Dec 11, 2024 by mahesh-panchal
Package nextflow plugins with nf-core download enhancement
#3344 opened Dec 11, 2024 by fa2k
1
Schema: Conditional show / hide of parameters schema
#3320 opened Dec 4, 2024 by ewels
Make main default for all nf-core repos
#3316 opened Dec 3, 2024 by mashehu
Add opt-in option to template features enhancement
#3315 opened Dec 3, 2024 by mirpedrol
3 tasks
3.3.0
Automated suggestions for semantic release number enhancement
#3314 opened Dec 3, 2024 by pinin4fjords
Pipeline schema build help modal loses text area focus bug Something isn't working
#3312 opened Dec 2, 2024 by swingingsimian
1
ProTip! Updated in the last three days: updated:>2025-01-29.