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Remove c3d from Dockerfilr
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effigies authored Oct 12, 2024
1 parent f0addef commit 2275b89
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7 changes: 0 additions & 7 deletions Dockerfile
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Expand Up @@ -86,12 +86,6 @@ RUN mkdir /opt/workbench && \
rm -rf /opt/workbench/libs_linux64_software_opengl /opt/workbench/plugins_linux64 && \
strip --remove-section=.note.ABI-tag /opt/workbench/libs_linux64/libQt5Core.so.5

# Convert3d 1.4.0
FROM downloader AS c3d
RUN mkdir /opt/convert3d && \
curl -fsSL --retry 5 https://sourceforge.net/projects/c3d/files/c3d/Experimental/c3d-1.4.0-Linux-gcc64.tar.gz/download \
| tar -xz -C /opt/convert3d --strip-components 1

# Micromamba
FROM downloader AS micromamba

Expand Down Expand Up @@ -181,7 +175,6 @@ RUN apt-get update -qq \
COPY --from=freesurfer /opt/freesurfer /opt/freesurfer
COPY --from=afni /opt/afni-latest /opt/afni-latest
COPY --from=workbench /opt/workbench /opt/workbench
COPY --from=c3d /opt/convert3d/bin/c3d_affine_tool /usr/bin/c3d_affine_tool

# Simulate SetUpFreeSurfer.sh
ENV OS="Linux" \
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