1.4.0rc6

1.4.0rc6 (May 17, 2021)

* FIX: ``DerivativesDataSink`` dismissing entity writing reportlet (#638)
* FIX: Limit memory usage in ``EstimateReferenceImage`` (#629)
* FIX: Purge removed ``--disable`` flag from *svgo* call (#626)
* FIX: Readd ``sbref_file`` input to reference volume interface (#624)
* ENH: Update visual report specification with fieldmaps (#634)
* ENH: Expose the output of the ``ValidateImage`` node as an output in EPI reference workflow (#636)
* DOC: Ensure copyright notice in all headers' comment (#635)
* MAINT: Pin *svgutils* to previous versions (#596)

1.3.3

Release Notes

Bug-fix release in the 1.3.x series.

CHANGES

• FIX: Limit memory usage in EstimateReferenceImage (#629)
• FIX: Check for in_segm input, not seg_file (#592)
• FIX: Use the mask to calculate FOV rather than the fixed image in GenerateSamplingReference (#583)
• FIX: Allow omission of for template normalization (#582)
• MAINT: Pin svgutils to 0.3.1 (#596)
• MAINT: Migrate from Travis -> GH Actions (#589)
• CI: CircleCI housekeeping (#580)

1.4.0rc5

First release in the 1.4.x series.
This release includes enhancements and bug-fixes towards the release of the first
beta version of *dMRIPrep*.
It also contains new features that are necessary for the API overhaul that has
happened within the new *SDCFlows 2.x* series.
The new series include a cross-cutting (modalities, species) workflow to generate
EPI references.
Finally other *NiPreps* will also have a first release with specific support for
them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions).

* FIX: Update svgutils after breaking API changes (#620)
* FIX: Address issues with ``RobustAverage`` global signal measurement (#607)
* FIX: Check for ``in_segm`` input, not ``seg_file`` (typo) (#592)
* FIX: Use the mask to calculate FOV rather than the fixed image in ``GenerateSamplingReference`` (#583)
* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Add an inversion operation to ``IntensityClip`` (#616)
* ENH: Cross-cutting (modalities, species) workflow to generate EPI references (#610)
* ENH: Add a ``RobustAverage`` interface and split volume selection (#602)
* ENH: Revise some patterns of the ``BIDSLayout`` config to aid *SDCFlows* new API (#585)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: Drop gh-pages history, reducing repository size (#622)
* MAINT: Add DS030 dataset, with clipped (55 timepoints) BOLD data (#609)
* MAINT: Migrate ``ds003_downsampled`` to ``nipreps-data`` (#608)
* MAINT: Move mask-regressions test-data to datalad + nipreps-data (#606)
* MAINT: Refactor structure of interfaces (#603)
* MAINT: Drop Python 3.6, test setuptools builds, pip installations, and revise Docker pinned versions (#593)
* MAINT: CircleCI housekeeping (#580)

1.4.0rc4

First release in the 1.4.x series.
This release includes enhancements and bug-fixes towards the release of the first
beta version of *dMRIPrep*.
It also contains new features that are necessary for the API overhaul that has
happened within the new *SDCFlows 2.x* series.
The new series include a cross-cutting (modalities, species) workflow to generate
EPI references.
Finally other *NiPreps* will also have a first release with specific support for
them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions).

A list of prominent changes follows:

* FIX: Address issues with ``RobustAverage`` global signal measurement (#607)
* FIX: ``NonsteadyStatesDetector`` wrongly using Nipype's ``is_outlier`` (#605)
* FIX: Change in *svgutils*' API on 0.3.2 breaks reportlets (#599)
* FIX: Check for ``in_segm`` input, not ``seg_file`` (typo) (#592)
* FIX: Use the mask to calculate FOV rather than the fixed image in ``GenerateSamplingReference`` (#583)
* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Add an inversion operation to ``IntensityClip`` (#616)
* ENH: Cross-cutting (modalities, species) workflow to generate EPI references (#610)
* ENH: Add a ``RobustAverage`` interface and split volume selection (#602)
* ENH: Revise some patterns of the ``BIDSLayout`` config to aid *SDCFlows* new API (#585)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: Add DS030 dataset, with clipped (55 timepoints) BOLD data (#609)
* MAINT: Migrate ``ds003_downsampled`` to ``nipreps-data`` (#608)
* MAINT: Move mask-regressions test-data to datalad + nipreps-data (#606)
* MAINT: Refactor structure of interfaces (#603)
* MAINT: Drop Python 3.6, test setuptools builds, pip installations, and revise Docker pinned versions (#593)
* MAINT: CircleCI housekeeping (#580)

1.4.0rc3

* FIX: Check for ``in_segm`` input, not ``seg_file`` (typo) (#592)
* FIX: Use the mask to calculate FOV rather than the fixed image in ``GenerateSamplingReference`` (#583)
* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Revise some patterns of the ``BIDSLayout`` config to aid *SDCFlows*' new API (#585)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: Drop Python 3.6, test ``setuptools`` builds, ``pip`` installations, and revise Docker pinned versions (#593)
* MAINT: CircleCI housekeeping (#580)

1.4.0rc2

First release in the 1.4.x series.
This release includes enhancements and bug-fixes towards the release of the first
beta version of *dMRIPrep*.
It also contains new features that are necessary for the API overhaul that has
happened within the new *SDCFlows 2.x* series.
Finally other *NiPreps* will also have a first release with specific support for
them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions).

A list of prominent changes follows:

* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: CircleCI housekeeping (#580)

1.4.0rc1

First release in the 1.4.x series.
This release includes enhancements and bug-fixes towards the release of the first
beta version of *dMRIPrep*.
It also contains new features that are necessary for the API overhaul that has
happened within the new *SDCFlows 2.x* series.
Finally other *NiPreps* will also have a first release with specific support for
them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions).

A list of prominent changes follows:

* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: CircleCI housekeeping (#580)

1.4.0rc0

First release in the 1.4.x series.
This release includes enhancements and bug-fixes towards the release of the first
beta version of *dMRIPrep*.
It also contains new features that are necessary for the API overhaul that has
happened within the new *SDCFlows 2.x* series.
Finally other *NiPreps* will also have a first release with specific support for
them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions).

A list of prominent changes follows:

* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: CircleCI housekeeping (#580)

1.3.2

Release Notes

Bug-fix release in the 1.3.x series.

CHANGES

• FIX: Cordon off .dtseries.json contents (#578)
• ENH: Add units to qform overwrite report (#577)

1.3.1

Release Notes

Bug-fix release in the 1.3.x series.
Addresses longstanding issues in the anatomical MRI brain extraction workflow.

CHANGES

• FIX: Revision of antsBrainExtraction, better handling edge cases (#567)