added optional argument 'subjects_dir' to project_volume_data #304
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Dear PySurfers,
I have improved the "project_volume_data" function in surfer.io. It now accepts an additional optional argument "subjects_dir" of type str (default: None), which overrides the SUBJECTS_DIR environment variable in the call to Freesurfer's mri_vol2surf function by specifying its "--sd" argument.
I find this useful especially when, for instance, the Freesurfer code and the neuroimaging data live on different (remote) servers.
I have updated the documentation of that function by pasting the explanation of the same argument from PySurfer's "Brain" class. So it should be pretty clear what it does.
I hope you will find this useful!
Cheers,
Michael