[WIP] FIX - AFNI Zeropad sets out_file #752
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| name: Contribution checks | |
| # This checks validate contributions meet baseline checks | |
| # | |
| # * specs - Ensure make | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - maint/* | |
| pull_request: | |
| branches: | |
| - master | |
| - maint/* | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: contrib-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| jobs: | |
| stable: | |
| # Check each OS, all supported Python, minimum versions and latest releases | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: [3.8] | |
| nipype-extras: ["dev"] | |
| check: ["specs", "style"] | |
| env: | |
| DEPENDS: "" | |
| CHECK_TYPE: ${{ matrix.check }} | |
| NIPYPE_EXTRAS: ${{ matrix.nipype-extras }} | |
| EXTRA_PIP_FLAGS: "" | |
| INSTALL_DEB_DEPENDENCIES: false | |
| INSTALL_TYPE: pip | |
| CI_SKIP_TEST: 1 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Create virtual environment | |
| run: tools/ci/create_venv.sh | |
| - name: Build archive | |
| run: | | |
| source tools/ci/build_archive.sh | |
| echo "ARCHIVE=$ARCHIVE" >> $GITHUB_ENV | |
| - name: Install Debian dependencies | |
| run: tools/ci/install_deb_dependencies.sh | |
| if: ${{ matrix.os == 'ubuntu-18.04' }} | |
| - name: Install dependencies | |
| run: tools/ci/install_dependencies.sh | |
| - name: Install Nipype | |
| run: tools/ci/install.sh | |
| - name: Run tests | |
| run: tools/ci/check.sh | |
| if: ${{ matrix.check != 'skiptests' }} | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| file: coverage.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: ${{ always() }} | |
| - name: Upload pytest test results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pytest-results-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: test-results.xml | |
| if: ${{ always() && matrix.check == 'test' }} |