[WIP] FIX - AFNI Zeropad sets out_file #868
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| name: Stable tests | |
| # This file tests the claimed support range of nipype including | |
| # | |
| # * Operating systems: Linux, OSX | |
| # * Dependencies: minimum requirements, optional requirements | |
| # * Installation methods: setup.py, sdist, wheel, archive | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - maint/* | |
| tags: | |
| - "*" | |
| pull_request: | |
| branches: | |
| - master | |
| - maint/* | |
| schedule: | |
| # 8am EST / 9am EDT Mondays | |
| - cron: "0 13 * * 1" | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: tests-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: {} | |
| jobs: | |
| build: | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3 | |
| - run: pip install --upgrade build twine | |
| - name: Build sdist and wheel | |
| run: python -m build | |
| - run: twine check dist/* | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: dist | |
| path: dist/ | |
| test-package: | |
| runs-on: ubuntu-latest | |
| needs: [build] | |
| strategy: | |
| matrix: | |
| package: ["wheel", "sdist"] | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: dist | |
| path: dist/ | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3 | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Update pip | |
| run: pip install --upgrade pip | |
| - name: Install wheel | |
| run: pip install dist/nipype-*.whl | |
| if: matrix.package == 'wheel' | |
| - name: Install sdist | |
| run: pip install dist/nipype-*.tar.gz | |
| if: matrix.package == 'sdist' | |
| - run: python -c 'import nipype; print(nipype.__version__)' | |
| - name: Install test extras | |
| run: pip install nipype[tests] | |
| - name: Run tests | |
| run: pytest --doctest-modules -v --pyargs nipype | |
| stable: | |
| # Check each OS, all supported Python, minimum versions and latest releases | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-22.04"] | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| check: ["test"] | |
| pip-flags: [""] | |
| depends: ["REQUIREMENTS"] | |
| deb-depends: [false] | |
| nipype-extras: ["doc,tests,profiler"] | |
| include: | |
| - os: ubuntu-22.04 | |
| python-version: "3.8" | |
| check: test | |
| pip-flags: "" | |
| depends: REQUIREMENTS | |
| deb-depends: true | |
| nipype-extras: doc,tests,profiler,duecredit,ssh | |
| - os: ubuntu-20.04 | |
| python-version: 3.8 | |
| check: test | |
| pip-flags: "" | |
| depends: REQUIREMENTS | |
| deb-depends: true | |
| nipype-extras: doc,tests,nipy,profiler,duecredit,ssh | |
| env: | |
| DEPENDS: ${{ matrix.depends }} | |
| CHECK_TYPE: ${{ matrix.check }} | |
| EXTRA_PIP_FLAGS: ${{ matrix.pip-flags }} | |
| INSTALL_DEB_DEPENDENCIES: ${{ matrix.deb-depends }} | |
| NIPYPE_EXTRAS: ${{ matrix.nipype-extras }} | |
| INSTALL_TYPE: pip | |
| CI_SKIP_TEST: 1 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Create virtual environment | |
| run: tools/ci/create_venv.sh | |
| - name: Build archive | |
| run: | | |
| source tools/ci/build_archive.sh | |
| echo "ARCHIVE=$ARCHIVE" >> $GITHUB_ENV | |
| - name: Install Debian dependencies | |
| run: tools/ci/install_deb_dependencies.sh | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| - name: Install dependencies | |
| run: tools/ci/install_dependencies.sh | |
| - name: Install Nipype | |
| run: tools/ci/install.sh | |
| - name: Run tests | |
| run: tools/ci/check.sh | |
| if: ${{ matrix.check != 'skiptests' }} | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| file: coverage.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: ${{ always() }} | |
| - name: Upload pytest test results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pytest-results-${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.deb-depends }} | |
| path: test-results.xml | |
| if: ${{ always() && matrix.check == 'test' }} | |
| publish: | |
| runs-on: ubuntu-latest | |
| environment: "Package deployment" | |
| needs: [stable, test-package] | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/') | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: dist | |
| path: dist/ | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} |