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1. seqspace seqspace Public

   Library to normalize scRNAseq expression data and learn its underlying geometric structure

   Julia 1

2. neherlab/pangraph neherlab/pangraph Public

   A bioinformatic toolkit to align genome assemblies into pangenome graphs

   Julia 89 7

3. neherlab/covid19_scenarios neherlab/covid19_scenarios Public

   Models of COVID-19 outbreak trajectories and hospital demand

   JavaScript 1.4k 352

4. tissueAnalysisSuite tissueAnalysisSuite Public

   A complete set of MATLAB code to segment live-image movies of developing epithelial tissues, track cellular flows, and infer intercellular stresses.

   MATLAB 3 1

5. vertexModelSimulation vertexModelSimulation Public

   Simulates a growing, dividing epithelial tissue under the active tension network model, as well as under finite pressure differentials.

   MATLAB 1

6. neherlab/covid19_scenarios_data neherlab/covid19_scenarios_data Public archive

   Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

   Python 41 34