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18 Open 233 Closed
18 Open 233 Closed
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Issues list

Development of a converter between SBOL2 and SBOL3 in Python Difficulty: Hard Python SBOL Size: 350h
#257 opened Feb 5, 2025 by Gonza10V
@jakebeal @Gonza10V
3
cy3sbml update: major fixes, library upgrades, and new features Cytoscape Difficulty: Medium Java SBML Size: 175h
#256 opened Feb 4, 2025 by matthiaskoenig
@matthiaskoenig
1
BioSeqJournal: Julia Journaled Sequences Library C++ Difficulty: Hard Julia Size: 175h
#255 opened Jan 27, 2025 by marcoxa
@marcoxa @danro9685
3
Refactor Cytosnap to use Playwright Canvas Cytoscape.js Difficulty: Easy JavaScript Size: 175h
#254 opened Jan 27, 2025 by maxkfranz
@maxkfranz @gbader @mikekucera
3
Web-Based Interactive Visualization to intigrate Geneset Analysis with DBRetina CSS Cytoscape.js Difficulty: Medium HTML JavaScript Size: 175h
#251 opened Jan 25, 2025 by MoHelmy
@drtamermansour @MoHelmy
5
Integrating DBRetina with an LLM-Powered Chatbot for Genomic Data Exploration C++ CSS Difficulty: Hard HTML LLM Machine learning Size: 175h
#250 opened Jan 25, 2025 by MoHelmy
@drtamermansour @MoHelmy
4
Website for VCellDB.org CSS Difficulty: Medium HTML Java JavaScript JSON REST Size: 175h VCell web services XML
#249 opened Jan 23, 2025 by vcellmike
@vcellmike
11
COBRAxy: spatial and single-cell metabolic modelling Difficulty: Medium Galaxy Python Size: 175h
#248 opened Jan 22, 2025 by kiaradamiani
@kiaradamiani
Improving Cytoscape.js layout utilities Cytoscape.js Difficulty: Hard JavaScript Size: 175h
#247 opened Jan 22, 2025 by ugurdogrusoz
@ugurdogrusoz
2
Automating the constructions of datasets from SynBioHub to streamline the trainning of ML models on standardized data in SBOL Difficulty: Medium Machine learning Python SBOL Size: 175h
#246 opened Jan 17, 2025 by Gonza10V
@cjmyers @Gonza10V
5
Assisting the creation of SBGN diagrams using large language models (LLMs) CSS Difficulty: Medium HTML JavaScript SBGN Size: 175h
#245 opened Jan 10, 2025 by hasanbalci
@cannin @hasanbalci
5
Getting the complexity score from SBOL files to streamline DNA synthesis using standards Difficulty: Medium Python SBOL Size: 175h
#241 opened Mar 25, 2024 by Gonza10V
@jakebeal @Gonza10V
7
Cytoscape Automated Testing Suite for Biomedical Visualization Cytoscape Difficulty: Medium JavaScript Python REST Size: 175h
#233 opened Jan 14, 2024 by jingjingbic
@keiono @coleslaw481
@jingjingbic @d2fong
8
Generate Automated Layouts for Pathways with Large-Language Model (e.g., ChatGPT) Planning Difficulty: Easy Difficulty: Medium LLM Python SBGN Size: 175h
#232 opened Jan 12, 2024 by cannin
@adrienrougny @cannin
8
Large Network Renderer Cytoscape Difficulty: Medium Hierarchical network HiView JavaScript JSON NDEx OpenGL Size: 175h
#229 opened Jan 12, 2024 by jingjingbic
@keiono @jingjingbic @d2fong
13
Cytoscape.js extension template using ESM Cytoscape.js Difficulty: Easy JavaScript Size: 175h
#223 opened Mar 1, 2023 by maxkfranz
@maxkfranz @gbader
@chrtannus @mikekucera
25
Prototype COSE Network Layout Algorithm to Support Biological Context for Layouts More Intuitive to Humans Cytoscape.js Difficulty: Medium JavaScript JSON Size: 175h
#219 opened Jan 20, 2023 by cannin
@cannin @ugurdogrusoz
15
Making biological network knowledge discoverable and accessible on search engines CSS Difficulty: Easy HTML JavaScript Python Size: 175h XML
#218 opened Jan 20, 2023 by cannin
@cannin
43
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