Merge pull request #18 from nutriverse:dev

refresh package; fix #14; fix #15

.Rbuildignore

@@ -11,3 +11,4 @@
 ^\.github$
 ^pkgdown$
 ^codecov\.yml$
+^README\.html$

.github/CONTRIBUTING.md

@@ -2,7 +2,7 @@
 
 ## Bugs
 
-* Submit an issue on the [issues page](https://github.com/nutriverse/anthrocheckr/issues)
+* Submit an issue on the [issues page](https://github.com/repo/issues)
 
 ## Code contributions
 
@@ -11,14 +11,14 @@
 * Clone your version on your account down to your machine from your account 
 
 ```
-git clone https://github.com/<yourgithubusername>/anthrocheckr.git
+git clone https://github.com/<yourgithubusername>/rep_name.git
 ```
 
-* Make sure to track progress upstream i.e., on our version of `anthrocheckr` 
-at `nutriverse/anthrocheckr`, by doing 
+* Make sure to track progress upstream i.e., on our version of `repo_name` 
+at `repo`, by doing 
 
 ```
-git remote add upstream https://github.com/nutriverse/anthrocheckr.git
+git remote add upstream https://github.com/repo.git
 ```
 
 * Before making changes make sure to pull changes in from `upstream` by doing 
@@ -32,4 +32,4 @@ documentation
 
 * Push up changes to your account
 
-* Submit a pull request at `nutriverse/anthrocheckr`
+* Submit a pull request at `repo`

.github/workflows/R-CMD-check.yaml

@@ -4,9 +4,10 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
 
-name: R-CMD-check
+name: R-CMD-check.yaml
+
+permissions: read-all
 
 jobs:
   R-CMD-check:

.github/workflows/pkgdown.yaml

@@ -4,12 +4,13 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
   release:
     types: [published]
   workflow_dispatch:
 
-name: pkgdown
+name: pkgdown.yaml
+
+permissions: read-all
 
 jobs:
   pkgdown:

.github/workflows/test-coverage.yaml

@@ -4,9 +4,10 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
 
-name: test-coverage
+name: test-coverage.yaml
+
+permissions: read-all
 
 jobs:
   test-coverage:
@@ -23,18 +24,28 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
             install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v4
+        with:
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |

.gitignore

@@ -3,5 +3,8 @@
 .RData
 .Ruserdata
 .DS_Store
+
 inst/doc
 docs
+
+README.html

DESCRIPTION

@@ -32,7 +32,7 @@ Suggests:
 Encoding: UTF-8
 Language: en-GB
 LazyData: true
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 URL: https://nutriverse.io/anthrocheckr/, https://github.com/nutriverse/anthrocheckr
 BugReports: https://github.com/nutriverse/anthrocheckr/issues
 VignetteBuilder: knitr

README.Rmd

@@ -17,10 +17,6 @@ knitr::opts_chunk$set(
 <!-- badges: start -->
 [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
 [![Lifecycle: maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing)
-[![CRAN status](https://www.r-pkg.org/badges/version/anthrocheckr)](https://cran.r-project.org/package=anthrocheckr)
-[![CRAN](https://img.shields.io/cran/l/anhtrocheckr.svg)](https://CRAN.R-project.org/package=anhtrocheckr)
-[![CRAN](http://cranlogs.r-pkg.org/badges/anhtrocheckr)](https://CRAN.R-project.org/package=anhtrocheckr)
-[![CRAN](http://cranlogs.r-pkg.org/badges/grand-total/anhtrocheckr)](https://CRAN.R-project.org/package=anhtrocheckr)
 [![R-CMD-check](https://github.com/nutriverse/anthrocheckr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/nutriverse/anthrocheckr/actions/workflows/R-CMD-check.yaml)
 [![R build status](https://github.com/nutriverse/anthrocheckr/workflows/test-coverage/badge.svg)](https://github.com/nutriverse/anthrocheckr/actions)
 [![Codecov test coverage](https://codecov.io/gh/nutriverse/anthrocheckr/branch/main/graph/badge.svg)](https://app.codecov.io/gh/nutriverse/anthrocheckr?branch=main)
@@ -58,4 +54,4 @@ citation("anthrocheckr")
 
 Feedback, bug reports and feature requests are welcome; file issues or seek support [here](https://github.com/nutriverse/anthrocheckr/issues). If you would like to contribute to the package, please see our [contributing guidelines](https://nutriverse.io/anthrocheckr/CONTRIBUTING.html).
 
-Please note that the `ennet` project is released with a [Contributor Code of Conduct](https://nutriverse.io/anthrocheckr/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.
+Please note that the `anthrocheckr` project is released with a [Contributor Code of Conduct](https://nutriverse.io/anthrocheckr/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.

README.md

@@ -10,11 +10,6 @@ state and is being actively
 developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
 [![Lifecycle:
 maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing)
-[![CRAN
-status](https://www.r-pkg.org/badges/version/anthrocheckr)](https://cran.r-project.org/package=anthrocheckr)
-[![CRAN](https://img.shields.io/cran/l/anhtrocheckr.svg)](https://CRAN.R-project.org/package=anhtrocheckr)
-[![CRAN](http://cranlogs.r-pkg.org/badges/anhtrocheckr)](https://CRAN.R-project.org/package=anhtrocheckr)
-[![CRAN](http://cranlogs.r-pkg.org/badges/grand-total/anhtrocheckr)](https://CRAN.R-project.org/package=anhtrocheckr)
 [![R-CMD-check](https://github.com/nutriverse/anthrocheckr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/nutriverse/anthrocheckr/actions/workflows/R-CMD-check.yaml)
 [![R build
 status](https://github.com/nutriverse/anthrocheckr/workflows/test-coverage/badge.svg)](https://github.com/nutriverse/anthrocheckr/actions)
@@ -58,8 +53,8 @@ citation("anthrocheckr")
 #> To cite anthrocheckr in publications use:
 #> 
 #>   Ernest Guevarra (2024). _anthrocheckr: An Implementation of
-#>   Anthropometric Measurement Standardisation Tests_. R package version
-#>   0.0.9000, <https://nutriverse.io/anthrocheckr/>.
+#>   Anthropometric Measurement Standardisation Tests_. R package
+#>   version 0.0.9000, <https://nutriverse.io/anthrocheckr/>.
 #> 
 #> A BibTeX entry for LaTeX users is
 #> 
@@ -80,7 +75,7 @@ If you would like to contribute to the package, please see our
 [contributing
 guidelines](https://nutriverse.io/anthrocheckr/CONTRIBUTING.html).
 
-Please note that the `ennet` project is released with a [Contributor
-Code of
+Please note that the `anthrocheckr` project is released with a
+[Contributor Code of
 Conduct](https://nutriverse.io/anthrocheckr/CODE_OF_CONDUCT.html). By
 contributing to this project, you agree to abide by its terms.