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Add deviation towards the medial side #833

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Original file line number Diff line number Diff line change
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---
pattern_name: deviationTowardsTheMedialSideOfAnatomicalEntity

pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/deviationTowardsTheMedialSideOfAnatomicalEntity.yaml

description: 'Use this pattern for phenotypes involving angulation,
directional change or bending towards the middle of an anatomical
entity that is abnormal in space or time (e.g. permanent).'

# examples:
# - http://purl.obolibrary.org/obo/HP_0030084 # Clinodactyly
# - http://purl.obolibrary.org/obo/HP_0001863 # Toe clinodactyly
# - http://purl.obolibrary.org/obo/HP_0009486 # Radial deviation of the hand
# - http://purl.obolibrary.org/obo/MP_0006253 # clinodactyly

contributors:
- https://orcid.org/0000-0001-8314-2140 # Ray Stefancsik
- https://orcid.org/0000-0003-4606-0597 # Susan Bello
- https://orcid.org/0000-0002-9900-7880 # Yvonne M. Bradford

classes:
deviation_towards_the_medial_side: PATO:0002177
abnormal: PATO:0000460
anatomical_entity: UBERON:0001062

relations:
characteristic_of: RO:0000052
has_modifier: RO:0002573
has_part: BFO:0000051

annotationProperties:
broad_synonym: oio:hasBroadSynonym

vars:
anatomical_entity: "'anatomical_entity'"

name:
text: "deviation of %s towards the middle"
vars:
- anatomical_entity

annotations:
- annotationProperty: broad_synonym
text: "shift of %s towards the middle"
vars:
- anatomical_entity

- annotationProperty: broad_synonym
text: "permanent bending of %s"
vars:
- anatomical_entity

def:
text: "A changed direction of position or shift towards the middle of %s."
vars:
- anatomical_entity

equivalentTo:
text: "'has_part' some (
'deviation_towards_the_medial_side'
and ('characteristic_of' some %s)
and ('has_modifier' some 'abnormal')
)"
vars:
- anatomical_entity
...