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Account for status that indicates Cromwell server issue #381

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merged 1 commit into from
Nov 11, 2024
Merged

Account for status that indicates Cromwell server issue #381

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2 changes: 2 additions & 0 deletions changes/fix_fail.md
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Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
Account for Cromwell server issue

5 changes: 5 additions & 0 deletions vidarr-cromwell/src/main/java/ca/on/oicr/gsi/vidarr/cromwell/CromwellWorkflowEngine.java
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Expand Up @@ -173,6 +173,11 @@ private void check(EngineState state, WorkMonitor<Result<String>, EngineState> m
return null;
});
break;
// Cromwell has become unavailable or there was a problem initializing the
// Cromwell job. Don't ask Cromwell for more information, just die
case "fail":
monitor.permanentFailure("Cromwell server issue for " + result.getId() + ": " + result.getStatus());
break;
case "Succeeded":
finish(state, monitor);
break;
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