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Okinawa Institute of Science & Technology

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  1. Usiigaci Usiigaci Public

    Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

    Jupyter Notebook 195 68

  2. LaTeX-templates LaTeX-templates Public

    Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal

    63 56

  3. optinist optinist Public

    calcium imaging pipeline tool

    TypeScript 38 13

  4. DenseObjectDetection DenseObjectDetection Public

    Detection of objects in an image using segmentation

    Python 34 14

  5. DenseObjectAnnotation DenseObjectAnnotation Public

    Tool to annotate objects in images.

    JavaScript 19 8

  6. course-scheduler course-scheduler Public

    Python code to generate course schedules for the Graduate School

    Python 12 6

Repositories

Showing 10 of 166 repositories
  • TER-MT-DB Public Forked from sihellem/TER-MT-DB

    The Termite Mitogenome Database. Centralization of termite mitogenomes and assignation of unique identification code.

    oist/TER-MT-DB’s past year of commit activity
    0 1 0 0 Updated Mar 1, 2025
  • emevo Public

    Simluate Embodied Evolution of Agents

    oist/emevo’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Feb 28, 2025
  • BioinfoUgrp Public

    OIST Bioinfo user group

    oist/BioinfoUgrp’s past year of commit activity
    Shell 7 2 1 0 Updated Feb 28, 2025
  • LuscombeU_nfcore_pairgenomealign_fork Public Forked from nf-core/pairgenomealign

    Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results

    oist/LuscombeU_nfcore_pairgenomealign_fork’s past year of commit activity
    Nextflow 0 MIT 3 0 0 Updated Feb 27, 2025
  • NEXTNetPy Public

    Python wrapper for the NEXTNet library for efficient simulation of epidemics on complex networks

    oist/NEXTNetPy’s past year of commit activity
    Jupyter Notebook 0 LGPL-3.0 0 0 0 Updated Feb 25, 2025
  • LuscombeU_fork_of_FASTGA Public Forked from thegenemyers/FASTGA

    Local fork of https://github.com/thegenemyers/FASTGA – Pairwise whole genome aligner

    oist/LuscombeU_fork_of_FASTGA’s past year of commit activity
    C 0 7 0 0 Updated Feb 25, 2025
  • plessy_nf_GenomicBreaks Public

    Draft Nextflow pipeline to convert alignment files and extract basic stats.

    oist/plessy_nf_GenomicBreaks’s past year of commit activity
    Nextflow 0 0 0 0 Updated Feb 20, 2025
  • optinist Public

    calcium imaging pipeline tool

    oist/optinist’s past year of commit activity
    TypeScript 38 GPL-3.0 13 50 9 Updated Feb 13, 2025
  • BioinfoUgrp_UnixGoodies_Images Public

    Singularity images with cool Unix tools to be exported as modules in HPC clusters

    oist/BioinfoUgrp_UnixGoodies_Images’s past year of commit activity
    Dockerfile 3 0 3 0 Updated Feb 10, 2025
  • Oikopleuradioica_genomeannotation Public

    Genome annotation of Oikopleura dioica from different geographical locations

    oist/Oikopleuradioica_genomeannotation’s past year of commit activity
    Shell 1 0 1 0 Updated Feb 8, 2025
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