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  1. czbiohub-sf/scrnaseq-for-the-99-percent Public archive

    Code accompanying the paper titled, "Single-cell transcriptomics for the 99.9% of species without reference genomes" by Botvinnik et al, 2021

    Jupyter Notebook 5 2

  2. mwaskom/seaborn Public

    Statistical data visualization in Python

    Python 12.9k 2k

  3. prettyplotlib Public

    Painlessly create beautiful matplotlib plots.

    Python 1.7k 148

  4. czbiohub-sf/orpheum Public archive

    Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.

    Python 18 4

  5. nf-core/kmermaid Public

    k-mer similarity analysis pipeline

    Nextflow 20 13

  6. dissertation Public

    Computational analysis of single-cell alternative splicing: A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Bioinformatics and Systems Bi…

    TeX 5 1

488 contributions in the last year

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Activity overview

Loading A graph representing olgabot's contributions from February 25, 2024 to February 26, 2025. The contributions are 78% commits, 14% pull requests, 6% issues, 2% code review.

Contribution activity

February 2025

Created a pull request in seanome/kmerseek that received 47 comments

Initial commit of kmerseek search, index

This PR implements what was originally in the fairly messy notebooks: https://github.com/olgabot/botryllus-mhc/blob/main/notebooks/201_create_all_…

+4,152 −2 lines changed 47 comments
Opened 3 other pull requests in 3 repositories
Reviewed 2 pull requests in 2 repositories

Created an issue in seanome/kmerseek that received 2 comments

Parallelize sourmash sig kmers!

sourmash sig kmers (wrapped in kmerseek.sketch.get_kmers called by kmerseek.entity.KmerseekEntity) is a single-threaded process that merges the pro…

2 comments
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