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Commits an alternative Zeiss CZI Reader #4092
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Commits on Sep 8, 2023
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Commits on Nov 2, 2023
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Commits on Nov 16, 2023
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Fix initFile failure when unitsLength is reference frame
zStep is always initialised as micrometer so no need to attempt unit conversion
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Commits on Dec 16, 2023
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CZI reader: fixes incorrect optimisation
checks that a single sublock exists when a cropped plane matches exactly a subblock region
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Commits on Dec 17, 2023
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Commits on Dec 18, 2023
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Fix truncation issue in downsampling calculation
Adds toString method to directory entry
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Commits on Jan 4, 2024
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Recovers file reading when subblock metadata has been deleted but is …
…present as an orphan block at the end of the file.
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Commits on Feb 4, 2024
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Fis issue with CZI edge cases:
- Fix mismatch between decompressed JPEGXR image dimension and subblock storedSize X & Y - Proper reading of linescans (handling of subblocks containing multiple Z or Ts) - Fix unit issue with linescans - Avoids NPE issue when no scaling metadata is found - adapts to PALM: make sure the data opens (downscaling can go below 1: superresolution) - Make metadata reading robust with absence of some sub-blocks - Correctly counts the number of channels, slices, and timepoints (they should always start at 0) - be robust to absence of sub-directory segment - There may be some information in slide previews that we do not want to keep. Hence a DummyMetadata is used when reading slide preview and macro images Minor documentation and formatting changes
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Commits on Feb 13, 2024
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Commits on Feb 22, 2024
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Commits on Feb 23, 2024
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Commits on Jun 27, 2024
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