Add series0 column to flamingo.csv. Used for Thumbnail image path

ome · Oct 15, 2024 · 511c5d0 · 511c5d0
1 parent 1a2af45
commit 511c5d0
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Showing 2 changed files with 10 additions and 6 deletions.
diff --git a/ome2024-ngff-challenge/src/ZarrListItem.svelte b/ome2024-ngff-challenge/src/ZarrListItem.svelte
@@ -4,7 +4,6 @@
   import { loadMultiscales } from "./tableStore";
   import Thumbnail from "./Thumbnail.svelte";
   import omeLogo from '/ome-logomark.svg';
-  import vizarrLogo from '/vizarr_logo.png';
 
   export let rowData;
   export let textFilter;
@@ -28,7 +27,12 @@
   }
 
   onMount(async () => {
-    let img = await loadMultiscales(rowData.url);
+    let zarrUrl = rowData.url;
+    // If we know the path to first series, add it
+    if (rowData.series0 !== undefined) {
+      zarrUrl += "/" + rowData.series0;
+    }
+    let img = await loadMultiscales(zarrUrl);
     imgAttrs = img[0];
     imgUrl = img[1];
     plateAttrs = img[2]; // optional

diff --git a/samples/flamingo.csv b/samples/flamingo.csv
@@ -1,4 +1,4 @@
-url,written,written_human_readable,shape,shards,chunks,dimension_names,license,name,description,organismId,fbbiId
-https://radosgw.public.os.wwu.de/n4bi-goe/Platynereis-H2B-TL.ome.zarr,2352780058,2.35 GB,"192,1024,1024","512,512,512","128,128,128","z,y,x",,,,,
-https://radosgw.public.os.wwu.de/n4bi-goe/Zebrafish-H2B-short-timelapse.ome.zarr,10417827625,10.42 GB,"322,2048,2048","512,512,512","128,128,128","z,y,x",,,,,
-https://radosgw.public.os.wwu.de/n4bi-goe/Zebrafish-XSPIM-multiview.ome.zarr,7168396046,7.17 GB,"342,2048,2048","512,512,512","128,128,128","z,y,x",,,,,
+url,written,written_human_readable,shape,shards,chunks,dimension_names,license,name,description,organismId,fbbiId,series0
+https://radosgw.public.os.wwu.de/n4bi-goe/Platynereis-H2B-TL.ome.zarr,2352780058,2.35 GB,"192,1024,1024","512,512,512","128,128,128","z,y,x",,,,,,setup0/timepoint0
+https://radosgw.public.os.wwu.de/n4bi-goe/Zebrafish-H2B-short-timelapse.ome.zarr,10417827625,10.42 GB,"322,2048,2048","512,512,512","128,128,128","z,y,x",,,,,,setup0/timepoint0
+https://radosgw.public.os.wwu.de/n4bi-goe/Zebrafish-XSPIM-multiview.ome.zarr,7168396046,7.17 GB,"342,2048,2048","512,512,512","128,128,128","z,y,x",,,,,,setup0/timepoint0