v0.5.0

ADRIA v0.5.0

Diff since v0.4.5

Closed issues:

• Juvenile metric: investigate small values (#92)
• Update result set to derive spatial data from stored geopackage (#124)
• Adjust MCDA functions to be more generic (#177)
• Standardize to NamedDimsArray + AxisKeys (#200)
• Adjust scenario input IDs for clarity (#205)
• Use NamedDims+AxisKeys instead of matrix for MCDA decision matrices (#221)
• Add human-readable name to Parameter types (#230)
• Use Haversine instead of Euclidean distance (#236)
• Adjust definition or sampling of dist_thresh so that the value representing 'don't use distance sorting' is as likely as values representing using distance sorting (#238)
• Register package (#245)
• Change reference to Input Set to Domain to align with interface functions (#246)
• Update growth rates for size class 6 (#268)
• Release v0.4.5 (#272)
• Possible bug in site_selection (#284)
• Bug in site selection example (#285)
• Scenario juvenile metric returning implausible values (?) and values > 1 (#292)
• Create function which returns just the set of criteria values needed for MCDA (#296)
• map_to_discrete() erroring due to type mismatch (#304)
• run_site_selection() errors out (#308)
• [Viz/Analysis] Scenario outcomes (#311)
• [Viz/Analysis] sensitivity analysis (bar/heatmap) (#312)
• [Viz/Analysis] temporal sensitivity analysis (#313)
• [Viz/Analysis] Regional Sensitivity Analysis (#314)
• [Viz/Analysis] Outcome-based factor mapping (#315)

Merged pull requests:

• Add parameter name and description to model specification (#273) (@ConnectedSystems)
• Adjust coral growth rate for size class 6 (#274) (@ConnectedSystems)
• Remove references to Input Set (#275) (@ConnectedSystems)
• Fix: calculate distance between sites (#276) (@ConnectedSystems)
• Simplify display of model spec (#278) (@ConnectedSystems)
• Parametric ResultSet (#279) (@ConnectedSystems)
• Consolidate normalize (#280) (@ConnectedSystems)
• Changes to site selection functions (#282) (@Rosejoycrocker)
• Changes to address bug in site_selection example (addresses issue #285 ) (#286) (@Rosejoycrocker)
• Consolidate Named array types to use NamedDims+AxisKeys (#287) (@ConnectedSystems)
• Reduce allocations in load_domain() (#288) (@ConnectedSystems)
• Add criteria parameter which indicates whether distance sorting is used. (#290) (@Rosejoycrocker)
• Add function n_locations() to determine number of sites/reefs/clusters (#291) (@ConnectedSystems)
• Miscellaneous cleanup (#293) (@ConnectedSystems)
• Fix bug causing implausible juvenile indicator values (#294) (@ConnectedSystems)
• Adjust samples when use of distance thresholds is turned off (#295) (@ConnectedSystems)
• CompatHelper: add new compat entry for AxisKeys at version 0.2, (keep existing compat) (#297) (@github-actions[bot])
• Additional safety checks for sampling (#298) (@ConnectedSystems)
• Adds sampler which can sample only parameters needed for site selection (#299) (@Rosejoycrocker)
• Adds function which calculates sites selection frequency for a set of provided samples (#301) (@Rosejoycrocker)
• Fix error mapping continous samples to discrete values (#305) (@ConnectedSystems)
• Adjust shelter volume to remove hardcoded index and leverage NamedDimsArray (#306) (@ConnectedSystems)
• Fix initial slice potentially not including lowest value (#307) (@ConnectedSystems)
• Clean up Project.toml + Precompile (#309) (@ConnectedSystems)
• Correct issue with size of NamedDims array for storing ranks in run_site_selection() (#310) (@Rosejoycrocker)
• Initial indicative visualization (#318) (@ConnectedSystems)
• Fix function extension issues (#319) (@ConnectedSystems)
• Better check for constancy in RSA (#320) (@ConnectedSystems)
• Update exploration tool to latest ADRIA API (#321) (@ConnectedSystems)
• Additional docs for Domain/ResultSets (#322) (@ConnectedSystems)
• Add capability to fix factors in place (#325) (@ConnectedSystems)
• Initial ReefMod interface and functionality (#326) (@ConnectedSystems)