catalog: fix test exceptions, #TASK-6445 #2665
task.yml
on: push
build
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Build Java app
4m 34s
test
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Execute Sonar Analysis
8m 51s
test
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Execute JUnit and Jacoco tests
10m 18s
deploy-docker
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Push Docker image
Annotations
2 errors
CellBaseValidatorTest.testNoActiveReleases:
opencga-core/src/test/java/org/opencb/opencga/core/cellbase/CellBaseValidatorTest.java#L76
Expected: exception with message a string containing "No active data releases found on cellbase"
but: message was "Assembly 'GRCm38' not found in cellbase url: 'https://ws.zettagenomics.com/cellbase', version: 'v5.2', species: 'mmusculus. Supported assemblies : [GRCm39]"
Stacktrace was: java.lang.IllegalArgumentException: Assembly 'GRCm38' not found in cellbase url: 'https://ws.zettagenomics.com/cellbase', version: 'v5.2', species: 'mmusculus. Supported assemblies : [GRCm39]
at org.opencb.opencga.core.cellbase.CellBaseValidator.validateSpeciesAssembly(CellBaseValidator.java:251)
at org.opencb.opencga.core.cellbase.CellBaseValidator.validate(CellBaseValidator.java:166)
at org.opencb.opencga.core.cellbase.CellBaseValidator.validate(CellBaseValidator.java:139)
at org.opencb.opencga.core.cellbase.CellBaseValidatorTest.testNoActiveReleases(CellBaseValidatorTest.java:76)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.ExpectedException$ExpectedExceptionStatement.evaluate(ExpectedException.java:258)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.apache.maven.surefire.junitcore.JUnitCore.run(JUnitCore.java:49)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.createRequestAndRun(JUnitCoreWrapper.java:120)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.executeLazy(JUnitCoreWrapper.java:105)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:77)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:69)
at org.apache.maven.surefire.junitcore.JUnitCoreProvider.invoke(JUnitCoreProvider.java:146)
at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:385)
at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:162)
at org.apache.maven.surefire.booter.ForkedBooter.run(ForkedBooter.java:507)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:495)
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test / Execute JUnit and Jacoco tests
There were 1 failed tests
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Artifacts
Produced during runtime
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build-folder
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917 MB |
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junit_hdp3.1_short_opencga.log
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90.2 KB |
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