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catalog: fix test exceptions, #TASK-6445 #2665

catalog: fix test exceptions, #TASK-6445

catalog: fix test exceptions, #TASK-6445 #2665

Triggered via push February 28, 2025 10:45
Status Failure
Total duration 15m 7s
Artifacts 2

task.yml

on: push
test  /  Execute Sonar Analysis
8m 51s
test / Execute Sonar Analysis
test  /  Execute JUnit and Jacoco tests
10m 18s
test / Execute JUnit and Jacoco tests
deploy-docker  /  Push Docker image
deploy-docker / Push Docker image
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2 errors
CellBaseValidatorTest.testNoActiveReleases: opencga-core/src/test/java/org/opencb/opencga/core/cellbase/CellBaseValidatorTest.java#L76
Expected: exception with message a string containing "No active data releases found on cellbase" but: message was "Assembly 'GRCm38' not found in cellbase url: 'https://ws.zettagenomics.com/cellbase', version: 'v5.2', species: 'mmusculus. Supported assemblies : [GRCm39]" Stacktrace was: java.lang.IllegalArgumentException: Assembly 'GRCm38' not found in cellbase url: 'https://ws.zettagenomics.com/cellbase', version: 'v5.2', species: 'mmusculus. Supported assemblies : [GRCm39] at org.opencb.opencga.core.cellbase.CellBaseValidator.validateSpeciesAssembly(CellBaseValidator.java:251) at org.opencb.opencga.core.cellbase.CellBaseValidator.validate(CellBaseValidator.java:166) at org.opencb.opencga.core.cellbase.CellBaseValidator.validate(CellBaseValidator.java:139) at org.opencb.opencga.core.cellbase.CellBaseValidatorTest.testNoActiveReleases(CellBaseValidatorTest.java:76) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.rules.ExpectedException$ExpectedExceptionStatement.evaluate(ExpectedException.java:258) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63) at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.ParentRunner.run(ParentRunner.java:413) at org.junit.runners.Suite.runChild(Suite.java:128) at org.junit.runners.Suite.runChild(Suite.java:27) at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.ParentRunner.run(ParentRunner.java:413) at org.apache.maven.surefire.junitcore.JUnitCore.run(JUnitCore.java:49) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.createRequestAndRun(JUnitCoreWrapper.java:120) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.executeLazy(JUnitCoreWrapper.java:105) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:77) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:69) at org.apache.maven.surefire.junitcore.JUnitCoreProvider.invoke(JUnitCoreProvider.java:146) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:385) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:162) at org.apache.maven.surefire.booter.ForkedBooter.run(ForkedBooter.java:507) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:495)
test / Execute JUnit and Jacoco tests
There were 1 failed tests

Artifacts

Produced during runtime
Name Size
build-folder
917 MB
junit_hdp3.1_short_opencga.log
90.2 KB