Complex Organization Of Living Matter

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33 repositories

NaturalVariation
Public
CartoCell Single-Cell Cartography tools
MATLAB
•0•1•1•0•Updated Oct 7, 2024Oct 7, 2024
MouseMuscleSOD1
Public
MATLAB
•0•0•0•0•Updated Jul 23, 2024Jul 23, 2024
seaStarProcessingSegmentation
Public
MATLAB
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GNU General Public License v3.0
•0•1•0•0•Updated Mar 26, 2024Mar 26, 2024
Processing3DSegmentation
Public
MATLAB
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GNU General Public License v3.0
•1•0•0•0•Updated Nov 17, 2023Nov 17, 2023
SalivaryGlands
Public
MATLAB
•0•0•0•0•Updated Jan 9, 2023Jan 9, 2023
3DAutomaticSegmentation
Public
Java
•
GNU General Public License v3.0
•1•2•0•1•Updated Jun 29, 2022Jun 29, 2022
StructuralAnalysisScutoids
Public
MATLAB
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GNU General Public License v3.0
•0•0•0•0•Updated Mar 8, 2022Mar 8, 2022
Epithelia3D
Public
"Scutoids are a geometrical solution to three-dimensional packing of epithelia" - https://www.nature.com/articles/s41467-018-05376-1.
computational-biology computational-geometry voronoi image-analysis developmental-biology
MATLAB
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GNU General Public License v3.0
•3•11•1•0•Updated Feb 14, 2022Feb 14, 2022
LimeSeg_Pipeline
Public
"A quantitative principle to understand 3D cellular connectivity in epithelial tubes" Gomez-Galvez et al
tissue computational-biology computational-geometry developmental-biology
MATLAB
•
GNU General Public License v3.0
•1•0•0•0•Updated Aug 24, 2021Aug 24, 2021
ForcesEpithelialTube
Public
MATLAB
•0•0•0•0•Updated Oct 13, 2020Oct 13, 2020
Vertex3DMonolayer
Public
MATLAB
•2•0•0•0•Updated Sep 10, 2020Sep 10, 2020
Epigraph
Public
EpiGraph is a Fiji plugin that combines computational geometry and graph theory to measure the degree of arrangement in any computational or natural tessellation.
plugin topology imagej biology developmental-biology graphlets fiji
Java
•
GNU General Public License v3.0
•0•1•0•0•Updated Aug 25, 2020Aug 25, 2020
Starfish_pipeline
Public
MATLAB
•0•0•0•0•Updated Aug 5, 2020Aug 5, 2020
NeuroblastomeIntegration
Public
"The topology of vitronectin: A complementary feature for neuroblastoma risk classification based on computer‐aided detection" by Vicente-Munuera et al.
cancer image-classification cancer-imaging-research network-analysis histopathology neuroblastoma
MATLAB
•0•3•0•0•Updated Oct 29, 2019Oct 29, 2019
Fiji-plugins
Public
GitHub Repository which is used as a Maven Repository
imagej fiji computational-biology image-analysis imagej-plugins developmental-biology fiji-plugin epithelia
0•1•0•0•Updated Oct 25, 2019Oct 25, 2019
VoronoiGraphlet
Public
MATLAB
•
GNU General Public License v3.0
•1•1•0•0•Updated Oct 24, 2019Oct 24, 2019
ForceInference
Public
MATLAB
•
GNU General Public License v3.0
•0•0•0•0•Updated Jul 31, 2019Jul 31, 2019
AlzheimerPascual
Public
MATLAB
•
GNU General Public License v3.0
•0•0•0•0•Updated Jul 12, 2019Jul 12, 2019
RatolisBarcelona
Public
MATLAB
•0•0•0•0•Updated Jul 10, 2019Jul 10, 2019
CABD-mouses-Carvajal
Public
MATLAB
•0•1•0•0•Updated Feb 14, 2019Feb 14, 2019
Plants
Public
MATLAB
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 31, 2019Jan 31, 2019
vertexModel3D
Public
3D simulation software for epithelial tissues
C++
•2•1•0•0•Updated Jan 4, 2019Jan 4, 2019
DNA-Damage
Public archive
MATLAB
•0•1•0•0•Updated Sep 27, 2018Sep 27, 2018
lime
Public
Overview and use of LimeSeg
0•0•0•0•Updated Sep 4, 2018Sep 4, 2018
lmweb
Public
0•0•0•0•Updated Aug 31, 2018Aug 31, 2018
AgingDots
Public archive
MATLAB
•0•1•0•0•Updated Aug 2, 2018Aug 2, 2018
VertexModel
Public
MATLAB
•0•0•0•0•Updated Jun 29, 2018Jun 29, 2018
FeatureSelection
Public
Jupyter Notebook
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GNU General Public License v3.0
•0•1•0•0•Updated Jun 19, 2018Jun 19, 2018
pseudostratifiedEpithelia
Public archive
MATLAB
•
GNU General Public License v3.0
•0•1•0•0•Updated May 4, 2018May 4, 2018
shapeIndex
Public
This repository is developed to analysed the rigidity of tessellations
MATLAB
•0•0•0•0•Updated Feb 7, 2018Feb 7, 2018