Skip to content

@HegemanLab Hegeman Lab

Change the repository type filter

All

    Repositories list

    40 repositories

    • vkmz

      Public
      metabolomics research tool for formula prediction and van Krevelen diagram generation
      HTML
      •
      MIT License
      •1•3•2•1•Updated Jun 9, 2021Jun 9, 2021

    • w4mclassfilter_galaxy_wrapper

      Public
      Galaxy-tool-wrapper for the w4mclassfilter R package, built with Planemo
      R
      •
      MIT License
      •3•0•2•0•Updated Mar 11, 2021Mar 11, 2021

    • w4mclassfilter

      Public
      Filter W4M data matrix and metadata by sample-class
      R
      •
      Other
      •1•0•2•0•Updated Mar 10, 2021Mar 10, 2021

    • galaxy-tardis

      Public
      docker-galaxy back up and restore with S3-compatible storage
      Shell
      •0•0•0•0•Updated Dec 4, 2020Dec 4, 2020

    • w4mcorcov_galaxy_wrapper

      Public
      Correlation vs. covariance plot - works like an OPLS-DA S-PLOT
      R
      •
      MIT License
      •2•1•1•0•Updated Nov 18, 2020Nov 18, 2020

    • data-processing-notes

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 12, 2020Mar 12, 2020

    • qe-documentation

      Public
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Mar 10, 2020Mar 10, 2020

    • MassSpecLogParser

      Public
      A log processor made in python designed to parse logs and send them to an InfluxDB database.
      Python
      •0•0•0•0•Updated Feb 26, 2020Feb 26, 2020

    • galaxy-metabolomics-tools

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Jan 30, 2020Jan 30, 2020

    • w4m-cgh-docker

      Public
      build W4M docker with tools customized for the Cohen Gardner Hegeman labs group
      MIT License
      •0•0•0•0•Updated Oct 27, 2019Oct 27, 2019

    • galomix

      Public
      0•1•0•0•Updated Aug 30, 2019Aug 30, 2019

    • shepherd-thermo-QE

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 31, 2019Jul 31, 2019

    • shepherd

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 24, 2019Jul 24, 2019

    • shepherd-bruker-amazonSL

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 23, 2019Jul 23, 2019

    • galaxy-tardis-bigdeletedbinaries

      Public archive
      Galaxy back up and restore with S3-compatible storage
      Shell
      •0•0•0•0•Updated May 26, 2019May 26, 2019

    • small-thermo-raw-file-examples

      Public
      Small Thermo RAW file examples for software testing.
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Feb 15, 2019Feb 15, 2019

    • ansible-galaxy-os

      Public
      An Ansible role is for configuring the base operating system useful for running Galaxy.
      MIT License
      •18•0•0•0•Updated Nov 16, 2018Nov 16, 2018

    • ansible-galaxy

      Public
      An Ansible role for managing a Galaxy (http://galaxyproject.org) server.
      Python
      •74•0•0•0•Updated Nov 14, 2018Nov 14, 2018

    • exactMassCalculator

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Oct 15, 2018Oct 15, 2018

    • atomicWeightsDecimal

      Public
      A Python dictionary of atomic weights in Decimal
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•1•0•Updated Oct 15, 2018Oct 15, 2018

    • w4mkmeans_galaxy_wrapper

      Public
      wrap stats::kmeans for Workflow4Metabolomics data
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 1, 2018Sep 1, 2018

    • w4mclstrpeakpics

      Public
      Visualize likelihoods and intensities of features among members of a cluster
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 1, 2018Sep 1, 2018

    • ansible-nginx

      Public
      An Ansible role for managing an nginx server.
      10•0•4•0•Updated Aug 23, 2018Aug 23, 2018

    • ansible-postgresql

      Public
      An Ansible role for managing a PostgreSQL (http://www.postgresql.org/) server
      Shell
      •58•0•1•0•Updated Aug 23, 2018Aug 23, 2018

    • galaxy-playbooks

      Public
      Playbooks for deploying and managing Galaxy
      0•0•3•0•Updated Aug 22, 2018Aug 22, 2018

    • ansible-postgresql-objects

      Public
      A simple Ansible role for managing PostgreSQL objects (users, groups, databases, and privileges).
      12•0•0•0•Updated Aug 20, 2018Aug 20, 2018

    • w4mjoinpn_galaxy_wrapper

      Public
      Join positive and negative ionization-mode datasets for the same samples
      Shell
      •0•0•1•0•Updated Aug 8, 2018Aug 8, 2018

    • extra_tools

      Public
      A collection of extra scripts and tools developed for one-off use. Some written in Python, some in R.
      R
      •0•0•0•0•Updated Jun 8, 2018Jun 8, 2018

    • mastr-ms

      Public
      Metabolomics experimental design, sample metadata configuration, and sample data acquisition.
      JavaScript
      •6•0•0•0•Updated Jun 6, 2018Jun 6, 2018

    • VanKrevelenLocal

      Public
      Python
      •0•6•0•0•Updated Jun 6, 2018Jun 6, 2018