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@NakhlehLab The Nakhleh Lab

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    9 repositories

    • NakhlehLab.github.io

      Public
      Nakhleh Lab web site
      HTML
      •1•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • PhyNetPy

      Public
      A python library for the simulation, analysis, and inference of phylogenetic networks
      Python
      •
      MIT License
      •0•4•0•0•Updated Aug 5, 2024Aug 5, 2024

    • PhyloNet

      Public
      Roff
      •1•18•6•0•Updated Jun 25, 2024Jun 25, 2024

    • Polyphest

      Public
      Fast Polyploid Phylogeny Estimation
      Python
      •
      MIT License
      •0•3•0•0•Updated Apr 4, 2024Apr 4, 2024

    • Maximal-Homologous-Groups

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 1, 2024Feb 1, 2024

    • MaCroDNA

      Public
      A high-accuracy tool for integrating scDNA-seq and scRNA-seq data
      integrationcancerscrna-seqcnv
      Python
      •
      MIT License
      •1•1•0•1•Updated Nov 12, 2023Nov 12, 2023

    • Model-Misspecification

      Public
      Python
      •0•0•0•0•Updated Nov 1, 2022Nov 1, 2022

    • Phylovar

      Public
      Phylovar is a phylogeny-aware SNV caller for single-cell sequencing data that scales up to millions of loci
      Python
      •1•2•0•0•Updated May 15, 2022May 15, 2022

    • MoTERNN

      Public
      Identifying mode of tumor evolution using recursive neural networks
      Python
      •2•3•0•0•Updated May 15, 2022May 15, 2022