Repositories list

• lexces-silicosis-predict

  Public
  This repository contains the code and documentation for the evaluation of a diagnostic prediction rule for silicosis

  R

  •

  MIT License

  •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• ricgraph

  Public
  Ricgraph - Research in context graph

  visualizationmetadataenrichment+ 14graphlinked-dataharvestknowledge-graphharvest-datagraph-databaseharvester+ 7

  Python

  •

  MIT License

  •4•27•0•0•Updated Feb 14, 2025Feb 14, 2025

• yoda

  Public
  A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

  ansibledataresearch+ 4yodairodsautomated-deploymentutrecht-university

  HTML

  •

  GNU General Public License v3.0

  •26•46•48•2•Updated Feb 14, 2025Feb 14, 2025

• yoda-ruleset

  Public
  iRODS ruleset and policies for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyodairods

  Python

  •

  GNU General Public License v3.0

  •13•9•0•1•Updated Feb 14, 2025Feb 14, 2025

• wildlifenl-research

  Public
  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•9•3•Updated Feb 14, 2025Feb 14, 2025

• yoda-clienttools

  Public
  Client-side Yoda tools - mainly intended for data managers and key users

  yoda

  Python

  •

  GNU General Public License v3.0

  •2•1•0•1•Updated Feb 14, 2025Feb 14, 2025

• msl_api

  Public
  PHP

  •1•0•0•8•Updated Feb 13, 2025Feb 13, 2025

• workshop-computational-reproducibility

  Public
  Material for the workshop 'Best Practices for Writing Reproducible Code'

  SCSS

  •

  Other

  •13•10•19•0•Updated Feb 13, 2025Feb 13, 2025

• hpc-spring-school

  Public
  Quarto website for HPC Spring School @ UU 2025

  github-pageswebsiteworkshop+ 2hpcquarto

  HTML

  •

  MIT License

  •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• visibility-check

  Public
  A tool for checking and extend the online presence of your publications

  JavaScript

  •0•0•0•8•Updated Feb 11, 2025Feb 11, 2025

• galaxy-tools-ibridges

  Public
  iBridges-based tools for Galaxy to interact with iRODS/YODA

  Python

  •

  MIT License

  •0•0•1•0•Updated Feb 11, 2025Feb 11, 2025

• BackToPure

  Public
  Python

  •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• ckanext-uu-oaipmh-server

  Public
  OAI-PMH API for B2FIND CKAN

  Python

  •

  GNU Affero General Public License v3.0

  •5•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• Paleobiology-Evolution

  Public
  Part of the BSc in Geosciences programme at UU: course materials

  Other

  •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• wildlifenl

  Public
  Back-end API for the WildlifeNL project.

  Go

  •

  Mozilla Public License 2.0

  •0•0•11•0•Updated Feb 9, 2025Feb 9, 2025

• containerplatform-docs

  Public
  Container Platform public documentation

  Dockerfile

  •2•1•0•0•Updated Feb 6, 2025Feb 6, 2025

• epos-msl

  Public
  EPOS Multi-scale laboratories CKAN deployment

  redisansiblesolr+ 4postgresqlckanapache2epos

  Shell

  •

  GNU General Public License v3.0

  •2•7•0•0•Updated Feb 6, 2025Feb 6, 2025

• yoda-portal

  Public
  Web portal for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonflaskyoda+ 1irods

  JavaScript

  •

  GNU General Public License v3.0

  •13•10•0•2•Updated Feb 6, 2025Feb 6, 2025

• momentum-dataflow

  Public
  Repository for publishing website about data management practices of the Momentum project

  datadatamanagementdatageneration

  HTML

  •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• getting-started

  Public
  Getting started with GitHub @UtrechtUniversity

  githubdocumentationgetting-started+ 1utrecht-university

  Creative Commons Zero v1.0 Universal

  •4•14•12•0•Updated Feb 5, 2025Feb 5, 2025

• autumn-fair

  Public
  Follow up on Summer-Fair.

  Jupyter Notebook

  •

  MIT License

  •0•1•2•0•Updated Feb 4, 2025Feb 4, 2025

• ibridges-ansible

  Public
  Ansible modules for syncing data with iRODS using iBridges.

  Python

  •

  MIT License

  •0•1•4•1•Updated Feb 3, 2025Feb 3, 2025

• sol

  Public
  HTML

  •1•0•2•1•Updated Feb 3, 2025Feb 3, 2025

• PBfR_stats

  Public
  Code for creating a Quarto report of the Privacy Basics for Researchers module stats

  HTML

  •

  MIT License

  •0•0•1•0•Updated Feb 3, 2025Feb 3, 2025

• wildlifenl-ingest

  Public
  Manual data ingest tool for the WildlifeNL project

  Mozilla Public License 2.0

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• wildlifenl-admin

  Public
  Administration tool for the WildlifeNL project

  Mozilla Public License 2.0

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• wildlifenl-client

  Public
  Client lib for interacting with the WildlifeNL API

  Go

  •

  Mozilla Public License 2.0

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• yoda-zabbix

  Public
  Zabbix files for Yoda: https://github.com/UtrechtUniversity/yoda

  zabbixyodazabbix-agentd

  Shell

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• yoda-web-mock

  Public
  Mocks for web services that Yoda depends on.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• yoda-external-user-service

  Public
  A service that provides for external user enrollment and external user management via a HTTP API for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyoda

  Python

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Jan 27, 2025Jan 27, 2025