Repositories list

• molemap

  Public
  C++

  •3•2•0•0•Updated Feb 27, 2025Feb 27, 2025

• PopinSnake

  Public
  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• popins4snake

  Public
  C++

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• kehrlab.github.io

  Public
  Website of Algorithmic Bioinformatics group at the RCI

  HTML

  •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

• Complex-SV-Genotyping

  Public
  C++

  •

  GNU General Public License v3.0

  •0•7•1•0•Updated Oct 9, 2024Oct 9, 2024

• PopDel

  Public
  Population-wide Deletion Calling

  population-genomicsvariant-callingstructural-variation+ 2sv-callingbioinformatics

  C++

  •

  GNU General Public License v3.0

  •2•35•2•0•Updated Sep 5, 2024Sep 5, 2024

• PopIns2

  Public
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs

  C++

  •

  GNU General Public License v2.0

  •4•24•3•0•Updated Apr 29, 2024Apr 29, 2024

• bcctools

  Public
  Correcting barcodes in 10X linked-read sequencing data.

  C++

  •

  GNU General Public License v3.0

  •3•4•1•0•Updated Apr 12, 2024Apr 12, 2024

• bcmapScripts

  Public
  Scripts used for testing and benchmarking of bcmap

  Python

  •0•0•0•0•Updated Jun 17, 2022Jun 17, 2022

• PopDel-scripts

  Public
  Collections of scripts used for the paper PopDel identifies medium-size deletions simultaneously in tens of thousands of genomes

  Shell

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Mar 22, 2022Mar 22, 2022

• bcsubset

  Public
  Tool for subsetting a BAM file based on a barcode whitelist

  C++

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Jul 15, 2021Jul 15, 2021