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    8 repositories

    • kmerseek

      Public
      Efficient protein domain annotation search with reduced amino acid k-mers
      MIT License
      •0•2•8•2•Updated Feb 25, 2025Feb 25, 2025

    • 2025-biodata-wealth-inequality

      Public
      Code to create figures showing wealth inequality of biological sequence data in the Protein Data Bank (PDB), UniProtKB/SwissProt, UniProtKB/TREMBL (AlphaFoldDB), and all
      MIT License
      •0•0•0•1•Updated Feb 21, 2025Feb 21, 2025

    • 2025-kmerseek-yc-demo

      Public
      Kmerseek demo example for YC S25 Application
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

    • 2024-kmerseek-analysis

      Public
      Analysis Scripts for Kmerseek protein search
      Jupyter Notebook
      •
      MIT License
      •1•1•3•4•Updated Jan 11, 2025Jan 11, 2025

    • seanome.org

      Public
      Code for Seanome.org website
      HTML
      •
      MIT License
      •0•1•6•0•Updated Dec 10, 2024Dec 10, 2024

    • nf-core-kmerseek

      Public
      Nextflow
      •
      MIT License
      •0•4•3•3•Updated Dec 5, 2024Dec 5, 2024

    • sourmash_plugin_branchwater

      Public
      fast, multithreaded sourmash operations: search, compare, and gather.
      Python
      •
      GNU Affero General Public License v3.0
      •5•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • 2024-sourmash-branchwater-tf-idf

      Public
      Exploring term frequency, inverse document frequency calculation for Sourmash branchwater k-mer searches
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024