St. Jude Rust Labs

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11 repositories

wdl
Public
Rust crates for working with Workflow Description Language (WDL) documents.
workflow bioinformatics workflow-engine ngs next-generation-sequencing wdl wdl-workflow
Rust
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Apache License 2.0
•14•35•30•1•Updated Mar 1, 2025Mar 1, 2025
fq
Public
Command line utility for manipulating Illumina-generated FASTQ files.
rust bioinformatics genomics next-generation-sequencing illumina fastq fastq-files
Rust
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MIT License
•5•82•5•0•Updated Feb 28, 2025Feb 28, 2025
crankshaft
Public
A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
workflow bioinformatics workflow-engine
Rust
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Apache License 2.0
•6•28•1•1•Updated Feb 24, 2025Feb 24, 2025
tes
Public
A crate for working with the Task Execution Service (TES) specification.
workflow bioinformatics workflow-engine ga4gh tes ga4gh-tes
Rust
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Apache License 2.0
•2•9•0•0•Updated Feb 21, 2025Feb 21, 2025
.github
Public
0•0•0•0•Updated Feb 18, 2025Feb 18, 2025
sprocket
Public
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
workflow bioinformatics workflow-engine bioinformatics-pipeline wdl wdl-workflow wdl-devtools
Rust
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Apache License 2.0
•5•45•3•0•Updated Feb 18, 2025Feb 18, 2025
sprocket-action
Public
Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.
workflow bioinformatics workflow-engine bioinformatics-pipeline wdl wdl-workflow wdl-devtools
Shell
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Apache License 2.0
•1•6•0•0•Updated Feb 4, 2025Feb 4, 2025
sprocket-vscode
Public
Visual Studio Code extension for Sprocket (https://github.com/stjude-rust-labs/sprocket).
workflow bioinformatics workflow-engine vscode vscode-extension wdl wdl-workflow wdl-devtools
TypeScript
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Apache License 2.0
•1•3•0•0•Updated Jan 22, 2025Jan 22, 2025
chainfile
Public
A crate for working with genomics chain files.
rust bioinformatics genomics liftover
Rust
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Apache License 2.0
•1•10•0•0•Updated Jan 4, 2025Jan 4, 2025
omics
Public
Foundations for the Rust omics ecosystem.
Rust
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Apache License 2.0
•0•9•1•0•Updated Jan 3, 2025Jan 3, 2025
ngs
Public
Command line utility for working with next-generation sequencing files.
rust bioinformatics genomics ngs next-generation-sequencing
Rust
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Apache License 2.0
•2•33•2•2•Updated Nov 12, 2024Nov 12, 2024