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update smoothxg #380

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Mar 18, 2024
Merged

update smoothxg #380

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2 changes: 1 addition & 1 deletion Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -76,7 +76,7 @@ RUN git clone --recursive https://github.com/ekg/seqwish \
RUN git clone --recursive https://github.com/pangenome/smoothxg \
&& cd smoothxg \
&& git pull \
&& git checkout ea362342bc4301f767727467953bafcaf147172b \
&& git checkout 52a81b7f87a7d7ad2e8bf5dc6e099a0556614f4a \
&& git submodule update --init --recursive \
&& sed -i 's/-msse4.1/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \
&& sed -i 's/-march=native/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \
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