update versions of actions (#46)

* update versions of actions

* update actions python versions

* update python build versions for ci

* strict typing for interpolation function array

* python version and increment minor version to trigger build

.github/workflows/build.yml

@@ -2,7 +2,7 @@
 
 name: build
 
-on: 
+on:
   push:
   pull_request:
   schedule:
@@ -15,14 +15,14 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"]
+        python-version: ["3.11.0", "3.12.0"]
     env:
       OS: ${{ matrix.os }}
       PYTHON: ${{ matrix.python-version }}
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
@@ -37,7 +37,7 @@ jobs:
       run: |
         pytest --cov=dorado/ --cov-report=xml
     - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v1
+      uses: codecov/codecov-action@v5
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
         file: ./coverage.xml
@@ -51,14 +51,14 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest]
-        python-version: ["3.9"]
+        python-version: ["3.11.0"]
     env:
       OS: ${{ matrix.os }}
       PYTHON: ${{ matrix.python-version }}
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
@@ -90,13 +90,13 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - name: Checkout
-      uses: actions/checkout@v2
+      uses: actions/checkout@v4
       with:
         persist-credentials: false
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v2
+    - name: Set up Python 3.11.0
+      uses: actions/setup-python@v5
       with:
-        python-version: '3.9'
+        python-version: '3.11.0'
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
@@ -121,7 +121,7 @@ jobs:
         echo ${{ github.ref == 'refs/heads/master' }}
         echo ${{ github.event_name == 'push' && github.ref == 'refs/heads/master' }}
     - name: Deploy to GitHub Pages
-      uses: JamesIves/github-pages-deploy-action@3.7.1
+      uses: JamesIves/github-pages-deploy-action@v4
       if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/master' }}
       with:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/deploy.yml

@@ -14,9 +14,9 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
     - name: Set up Python
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v5
       with:
         python-version: '3.x'
     - name: Install dependencies

README.md

@@ -25,12 +25,12 @@ For user guides and detailed examples, refer to the [documentation](https://pass
 </div>
 
 ## Installation:
-dorado supports Python 3.5+. For the full distribution including examples, clone this repository using `git clone` and run `python setup.py install` from the cloned directory. To test this "full" installation, you must first install `pytest` via `pip install pytest`. Then from the cloned directory the command `pytest` can be run to ensure that your installed distribution passes all of the unit tests.
+dorado supports Python 3.11+. For the full distribution including examples, clone this repository using `git clone` and run `python setup.py install` from the cloned directory. To test this "full" installation, you must first install `pytest` via `pip install pytest`. Then from the cloned directory the command `pytest` can be run to ensure that your installed distribution passes all of the unit tests.
 
 For a lightweight distribution including just the core functionality, use `pip` to install via PyPI:
 
     pip install pydorado
-    
+
 Installation using `conda` via `conda-forge` is also supported:
 
     conda install -c conda-forge pydorado

docs/source/install/index.rst

@@ -4,7 +4,7 @@
 Installation Instructions
 =========================
 
-dorado is compatible with Python 3.5+. There are only 4 dependencies: `numpy <https://numpy.org/install/>`_, `matplotlib <https://matplotlib.org/3.2.2/users/installing.html>`_, `scipy <https://www.scipy.org/install.html>`_, `future <https://python-future.org/>`_, and `tqdm <https://pypi.org/project/tqdm/>`_.
+dorado is compatible with Python 3.11+. There are only 4 dependencies: `numpy <https://numpy.org/install/>`_, `matplotlib <https://matplotlib.org/3.2.2/users/installing.html>`_, `scipy <https://www.scipy.org/install.html>`_, `future <https://python-future.org/>`_, and `tqdm <https://pypi.org/project/tqdm/>`_.
 
 Installation via `pip`
 ----------------------
@@ -13,7 +13,7 @@ To `pip`-install this package, first ensure that you have the dependencies liste
 ::
 
     $ pip install pydorado
-    
+
 Installation via `conda`
 ------------------------
 

dorado/__init__.py

@@ -1,4 +1,4 @@
-__version__ = "2.5.3"
+__version__ = "2.5.4"
 
 from . import lagrangian_walker
 from . import parallel_routing

dorado/particle_track.py

@@ -1203,7 +1203,7 @@ def unstruct2grid(coordinates,
     if k_nearest_neighbors == 1:  # Only use nearest neighbor
         index_qFun = interpolate.NearestNDInterpolator(inputXY,
                      np.arange(len(x), dtype='int64').transpose())
-        gridqInd = index_qFun(gridXY_array)
+        gridqInd = index_qFun(gridXY_array).astype(int)
 
         # Function to do the interpolation
         def interp_func(data):

setup.py

@@ -13,11 +13,10 @@
     package_data = {'' : ['*.txt', '*.npz']},
     long_description = 'See project webpage for details: https://github.com/passaH2O/dorado',
     classifiers = [
-        'Programming Language :: Python :: 3.7',
-        'Programming Language :: Python :: 3.8',
-        'Programming Language :: Python :: 3.9',
-        'Programming Language :: Python :: 3.10',
-        'Programming Language :: Python :: 3.11'],
+        'Programming Language :: Python :: 3.11',
+        'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
+        'Programming Language :: Python :: 3.14'],
     install_requires = ['numpy','matplotlib','scipy',
                         'future','tqdm'],
 )