Hotfix (#6)

* update github workflow

.github/workflows/deploy.yml

@@ -0,0 +1,32 @@
+# This workflows will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+name: deploy
+
+on: 
+  push:
+    branches:
+      - release
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.9
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -U setuptools setuptools_scm wheel twine
+      - name: Build and publish
+        env:
+          TWINE_USERNAME: __token__
+          TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }}
+        run: |
+          git tag
+          python setup.py sdist bdist_wheel
+          twine upload dist/*

.github/workflows/test_and_deploy.yml → .github/workflows/test_and_lint.yml

@@ -1,18 +1,15 @@
 # This workflows will upload a Python Package using Twine when a release is created
 # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
 
-name: tests
+name: test
 
-on:
-  push:
-    branches:
-      - release
-    tags:
-      - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
+on: 
   pull_request:
     branches:
-      - release
-  workflow_dispatch:
+      - main  # Specify the branch to monitor (adjust as needed)
+  schedule:
+    # Triggers the workflow on a schedule
+    - cron: '0 18 1 * *'  # First day of every month at 18:00 UTC
 
 jobs:
   test:
@@ -21,7 +18,7 @@ jobs:
     strategy:
       matrix:
         platform: [ubuntu-latest, windows-latest, macos-latest]
-        python-version: ['3.8', '3.9', '3.10']
+        python-version: ['3.9', '3.10', '3.11']
 
     steps:
       - uses: actions/checkout@v3
@@ -60,29 +57,3 @@ jobs:
 
       - name: Coverage
         uses: codecov/codecov-action@v3
-
-  deploy:
-    # this will run when you have tagged a commit, starting with "v*"
-    # and requires that you have put your twine API key in your
-    # github secrets (see readme for details)
-    needs: [test]
-    runs-on: ubuntu-latest
-    if: contains(github.ref, 'tags')
-    steps:
-      - uses: actions/checkout@v3
-      - name: Set up Python
-        uses: actions/setup-python@v4
-        with:
-          python-version: "3.x"
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install -U setuptools setuptools_scm wheel twine build
-      - name: Build and publish
-        env:
-          TWINE_USERNAME: __token__
-          TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }}
-        run: |
-          git tag
-          python -m build .
-          twine upload dist/*

README.md

@@ -1,11 +1,11 @@
 # destripe-lsfm
 
-[![License BSD-3](https://img.shields.io/pypi/l/destripe-lsfm.svg?color=green)](https://github.com/MMV-Lab/destripe-lsfm/raw/main/LICENSE)
-[![PyPI](https://img.shields.io/pypi/v/destripe-lsfm.svg?color=green)](https://pypi.org/project/destripe-lsfm)
-[![Python Version](https://img.shields.io/pypi/pyversions/destripe-lsfm.svg?color=green)](https://python.org)
-[![tests](https://github.com/MMV-Lab/destripe-lsfm/workflows/tests/badge.svg)](https://github.com/MMV-Lab/destripe-lsfm/actions)
-[![codecov](https://codecov.io/gh/MMV-Lab/destripe-lsfm/branch/main/graph/badge.svg)](https://codecov.io/gh/MMV-Lab/destripe-lsfm)
-[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/destripe-lsfm)](https://napari-hub.org/plugins/destripe-lsfm)
+[![License BSD-3](https://img.shields.io/pypi/l/destripe-lsfm.svg?color=green)](https://github.com/peng-Lab/lsfm_destripe_napari/raw/main/LICENSE)
+[![PyPI](https://img.shields.io/pypi/v/lsfm_destripe_napari.svg?color=green)](https://pypi.org/project/lsfm_destripe_napari)
+[![Python Version](https://img.shields.io/pypi/pyversions/lsfm_destripe_napari.svg?color=green)](https://python.org)
+[![tests](https://github.com/peng-Lab/lsfm_destripe_napari/workflows/tests/badge.svg)](https://github.com/peng-Lab/lsfm_destripe_napari/actions)
+[![codecov](https://codecov.io/gh/peng-Lab/lsfm_destripe_napari/branch/main/graph/badge.svg)](https://codecov.io/gh/peng-Lab/lsfm_destripe_napari)
+[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/lsfm_destripe_napari)](https://napari-hub.org/plugins/lsfm_destripe_napari)
 
 A simple plugin to destripe microscopy images
 
@@ -23,15 +23,15 @@ https://napari.org/stable/plugins/index.html
 
 ## Installation
 
-You can install `destripe-lsfm` via [pip]:
+You can install `lsfm_destripe_napari` via [pip]:
 
-    pip install destripe-lsfm
+    pip install lsfm_destripe_napari
 
 
 
 To install latest development version :
 
-    pip install git+https://github.com/MMV-Lab/destripe-lsfm.git
+    pip install git+https://github.com/peng-Lab/lsfm_destripe_napari.git
 
 
 ## Contributing
@@ -59,7 +59,7 @@ If you encounter any problems, please [file an issue] along with a detailed desc
 [Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
 [cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin
 
-[file an issue]: https://github.com/MMV-Lab/destripe-lsfm/issues
+[file an issue]: https://github.com/peng-Lab/lsfm_destripe_napari/issues
 
 [napari]: https://github.com/napari/napari
 [tox]: https://tox.readthedocs.io/en/latest/

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = destripe-lsfm
-version = attr: destripe_lsfm.__version__
+version = attr: lsfm_destripe_napari.__version__
 description = A simple plugin to destripe microscopy images
 long_description = file: README.md
 long_description_content_type = text/markdown
@@ -18,15 +18,15 @@ classifiers =
     Programming Language :: Python
     Programming Language :: Python :: 3
     Programming Language :: Python :: 3 :: Only
-    Programming Language :: Python :: 3.8
     Programming Language :: Python :: 3.9
     Programming Language :: Python :: 3.10
+    Programming Language :: Python :: 3.11
     Topic :: Scientific/Engineering :: Image Processing
 project_urls =
-    Bug Tracker = https://github.com/MMV-Lab/destripe-lsfm/issues
-    Documentation = https://github.com/MMV-Lab/destripe-lsfm#README.md
-    Source Code = https://github.com/MMV-Lab/destripe-lsfm
-    User Support = https://github.com/MMV-Lab/destripe-lsfm/issues
+    Bug Tracker = https://github.com/peng-Lab/lsfm_destripe_napari/issues
+    Documentation = https://github.com/peng-Lab/lsfm_destripe_napari#README.md
+    Source Code = https://github.com/peng-Lab/lsfm_destripe_napari
+    User Support = https://github.com/peng-Lab/lsfm_destripe_napari/issues
 
 [options]
 packages = find:
@@ -37,7 +37,7 @@ install_requires =
     aicsimageio
     lsfm_destripe
 
-python_requires = >=3.8
+python_requires = >=3.9
 include_package_data = True
 package_dir =
     =src
@@ -49,7 +49,7 @@ where = src
 
 [options.entry_points]
 napari.manifest =
-    destripe-lsfm = destripe_lsfm:napari.yaml
+    destripe-lsfm = lsfm_destripe_napari:napari.yaml
 
 [options.extras_require]
 testing =

src/destripe_lsfm/_tests/test_widget.py → src/lsfm_destripe_napari/_tests/test_widget.py

@@ -1,7 +1,7 @@
 import numpy as np
 import pytest
 
-from destripe_lsfm._widget import (
+from lsfm_destripe_napari._widget import (
     DestripeWidget,
 )
 

src/lsfm_destripe_napari/_tests/test_writer.py

@@ -0,0 +1,6 @@
+
+# add your tests here...
+
+
+def test_something():
+    pass

src/destripe_lsfm/_widget.py → src/lsfm_destripe_napari/_widget.py

@@ -26,8 +26,8 @@
 
 from lsfm_destripe.core import DeStripe
 
-from destripe_lsfm._reader import open_dialog, napari_get_reader
-from destripe_lsfm._writer import save_dialog, write_tiff
+from lsfm_destripe_napari._reader import open_dialog, napari_get_reader
+from lsfm_destripe_napari._writer import save_dialog, write_tiff
 
 
 

src/destripe_lsfm/napari.yaml → src/lsfm_destripe_napari/napari.yaml

@@ -7,13 +7,13 @@ categories: ["Annotation", "Segmentation", "Acquisition"]
 contributions:
   commands:
     - id: destripe-lsfm.get_reader
-      python_name: destripe_lsfm._reader:napari_get_reader
+      python_name: lsfm_destripe_napari._reader:napari_get_reader
       title: Open data with DeStripeLSFM
     - id: destripe-lsfm.write_tiff
-      python_name: destripe_lsfm._writer:write_tiff
+      python_name: lsfm_destripe_napari._writer:write_tiff
       title: Save image data with DeStripeLSFM
     - id: destripe-lsfm.make_qwidget
-      python_name: destripe_lsfm:DestripeWidget
+      python_name: lsfm_destripe_napari:DestripeWidget
       title: Make LSFM Destripe Widget
   readers:
     - command: destripe-lsfm.get_reader

tox.ini

@@ -1,11 +1,10 @@
 # For more information about tox, see https://tox.readthedocs.io/en/latest/
 [tox]
-envlist = py{38,39,310}-{linux,macos,windows}
+envlist = py{39,310}-{linux,macos,windows}
 isolated_build=true
 
 [gh-actions]
 python =
-    3.8: py38
     3.9: py39
     3.10: py310
 
@@ -29,4 +28,4 @@ passenv =
     PYVISTA_OFF_SCREEN
 extras =
     testing
-commands = pytest -v --color=yes --cov=destripe_lsfm --cov-report=xml
+commands = pytest -v --color=yes --cov=lsfm_destripe_napari --cov-report=xml