Inline events, add PyPI icon, add release v0.1

conf.py

@@ -12,6 +12,7 @@
 
 extensions = [
     'sphinx.ext.todo',
+    'sphinx_design',
 ]
 
 templates_path = ['_templates']
@@ -21,8 +22,11 @@
 
 html_theme = 'pydata_sphinx_theme'
 html_static_path = ['_static']
+html_js_files = ['custom-icons.js']
 html_show_sourcelink = False
 
+html_title = 'PhasorPy homepage'
+
 html_logo = '_static/logo.png'
 # html_favicon = ''
 
@@ -46,11 +50,12 @@
             'url': 'https://github.com/phasorpy/phasorpy',
             'icon': 'fa-brands fa-github',
         },
-        # {
-        #     'name': 'PyPI',
-        #     'url': 'https://pypi.org/project/phasorpy/',
-        #     'icon': 'fa-custom fa-pypi', "type": "fontawesome",
-        # },
+        {
+            'name': 'PyPI',
+            'url': 'https://pypi.org/project/phasorpy/',
+            'icon': 'fa-custom fa-pypi',
+            'type': 'fontawesome',
+        },
     ],
     'secondary_sidebar_items': [],
     'navbar_persistent': [],

index.rst

@@ -10,29 +10,31 @@ lifetime and hyperspectral images using the phasor approach.
 Documentation
 =============
 
-The `PhasorPy documentation <docs/stable/>`_ thorougly documents all aspects
+The `PhasorPy documentation <docs/stable/>`_ thoroughly documents all aspects
 of the library, including:
 
+- `Phasor approach <docs/stable/phasor_approach/>`_
 - `Tutorials <docs/stable/tutorials/>`_
 - `API reference <docs/stable/api/>`_
 - `Release notes <docs/stable/release/>`_
 - `Contributing guide <docs/stable/contributing/>`_
 - `Code of conduct <docs/stable/code_of_conduct/>`_
 - `Acknowledgments <docs/stable/acknowledgments/>`_
-- `License <docs/stable/license/>`_
+- `MIT License <docs/stable/license/>`_
 
 Resources
 =========
 
-Questions about the usage of the PhasorPy library are answered on the
-`issue tracker on GitHub <https://github.com/phasorpy/phasorpy/issues>`_.
-
-The library's source code and documentation are maintained in the
-`PhasorPy repository on GitHub <https://github.com/phasorpy/phasorpy>`_.
+- `Source code <https://github.com/phasorpy/phasorpy>`_ is maintained on GitHub.com.
+- `Download releases <https://pypi.org/project/phasorpy/>`_ from PyPI.org. 
+- `Data files <https://zenodo.org/communities/phasorpy>`_ are shared on Zenodo.org.
+- `Ask questions and report issues <https://github.com/phasorpy/phasorpy/issues>`_ on the GitHub issue tracker. 
 
 News
 ====
 
+- Sept 30, 2024: `PhasorPy 0.1 <https://pypi.org/project/phasorpy/>`_ is released to PyPI.
+
 - Sept 23, 2024: `100th commit <https://github.com/phasorpy/phasorpy/graphs/contributors>`_ to the PhasorPy source code.
 
 - June 12, 2024: PhasorPy is featured at the `CZI Open Science 2024 <https://chanzuckerberg.com/science/programs-resources/open-science/>`_ meeting.
@@ -62,7 +64,7 @@ News
 Events
 ======
 
-The PhasorPy project will be presented at the following events:
+The PhasorPy project is presented at the following events:
 
 - Bruno Pannunzio.
   PhasorPy: an open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach.
@@ -77,7 +79,58 @@ The PhasorPy project will be presented at the following events:
   October 21-24, 2024.
   Laboratory for Fluorescence Dynamics, University of California, Irvine, USA.
 
-More :doc:`events`.
+**Past events**
+
+- Leonel Malacrida.
+  Phasor Analysis for FLIM & STED.
+  `Montreal Light Microscopy Course (MLMC). In-Focus: STimulated Emission Depletion (STED) Microscopy
+  <https://www.canadabioimaging.org/mlmc-infocus-sted>`_.
+  July 22-26, 2024. Montreal, Canada.
+
+- Leonel Malacrida.
+  The phasor approach for biophysical studies of condensates and membranes using DAN probes.
+  `XXVII Congreso Nazionale SIBPA <https://www.sibpa.it/CongressoNazionaleSIBPAGenova/>`_.
+  June 16-20, 2024. Genoa, Italy.
+
+- Leonel Malacrida.
+  PhasorPy: a Python open-source library for phasor analysis of FLIM and HSI data.
+  `CZI Open Science 2024 <https://chanzuckerberg.com/science/programs-resources/open-science/>`_.
+  June 11-14, 2024. Boston.
+
+- Leonel Malacirda.
+  The phasor plots for time-resolved and hyperspectral imaging: fundamentals and new developments.
+  `Sociedad Argentina de Microscopia <https://www.samictucuman2024.com/>`_.
+  May 29-31, 2024. Tucuman, Argentina.
+
+- Leonel Malacrida.
+  The phasor plot analysis for hyperspectral imaging and time-resolved imaging: PhasorPy developments and its applications.
+  `Latin American Hub for Bioimaging Through Open Hardware (LIBRE Hub) Seminars
+  <https://librehub.github.io/2024/04/03/leonel-malacrida.html>`_.
+  May 15, 2024. Online.
+
+- Leonel Malacrida.
+  PhasorPy: a Python open-source library as SimFCS legacy for phasor analysis of FLIM and HSI data.
+  `Frontiers in Biological Fluorescence 2024 <https://www.lfd.uci.edu/frontiers/>`_.
+  May 10, 2024. University of California, Irvine, USA.
+
+- Leonel Malacrida.
+  Microscopía no lineal en Uruguay: 2P-FLIM y microscopio DIVER para estudiar procesos in vivo en la profundidad del tejido.
+  `Simposio en Microscopía y Bioimágenes: avances y desafíos
+  <https://cicada.uy/simposio-en-microscopia-y-bioimagenes-avances-y-desafios/>`_.
+  April 4-5, 2024. University of the Republic (UdelaR). Montevideo, Uruguay.
+
+- Leonel Malacrida.
+  Microscopy techniques applied to the analysis of biosensors performance.
+  `1st Latin-American Workshop: Development and applications of biosensors: from fluorescent proteins to synthetic biology
+  <https://pasteur.uy/cursos-y-charlas/1st-latin-american-workshop-development-and-applications-of-biosensors-from-fluorescent-proteins-to-synthetic-biology/>`_.
+  Nov 27 - Dec 1, 2023. Institut Pasteur de Montevideo, Uruguay.
+
+- Christoph Gohlke and Leonel Malacrida.
+  Introduction to PhasorPy.
+  `17th LFD Workshop in Advanced Fluorescence Imaging and Dynamics
+  <https://www.lfd.uci.edu/workshop/>`_.
+  October 23-27, 2023. Laboratory for Fluorescence Dynamics,
+  University of California, Irvine, USA.
 
 Index
 =====
@@ -86,4 +139,3 @@ Index
     :maxdepth: 1
 
     docs
-    events

requirements.txt

@@ -2,4 +2,5 @@
 #
 sphinx
 sphinx-issues
+sphinx-design
 pydata-sphinx-theme