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phonopy · Jan 10, 2025 · 2f14bc6 · 2f14bc6
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: a03f79a83b3c3629fd7740ebadfdbc93
+config: 4f3966656b71a445c1317ded498421e7
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/.doctrees/changelog.doctree b/.doctrees/changelog.doctree
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
diff --git a/.doctrees/velph-subcommands.doctree b/.doctrees/velph-subcommands.doctree
diff --git a/_sources/changelog.md b/_sources/changelog.md
@@ -2,6 +2,10 @@
 
 # Change Log
 
+## Jan-10-2025: Version 0.8.2
+
+- Collection of small updates of velph command
+
 ## Jan-8-2025: Version 0.8.1
 
 - Fix minor bugs in velph command

diff --git a/_sources/velph-subcommands.md b/_sources/velph-subcommands.md
@@ -216,18 +216,21 @@ VASP input files were generated in "transport".
 #### `velph transport plot transport`
 
 The following command opens a graphical window that contains plots of transport
-properties in `vaspout.h5`.
+properties.  By default, it uses the `transport/vaspout.h5` file unless a
+different file is specified as the first argument.
 
 ```bash
 % velph transport plot transport
 ```
 
 #### `velph transport plot eigenvalues`
 
-The following command opens a graphical window that displays eigenvalues in the
-Brillouin zone with non-zero and non-one occupations. These eigenvalues are
-obtained from `vaspout.h5`, and their occupations are computed based on the
-temperature and Fermi level specified through the command options.
+The following command opens a graphical window to display eigenvalues in the
+Brillouin zone with occupations that are neither zero nor one. By default, these
+eigenvalues are extracted from the `transport/vaspout.h5` file unless a
+different file is specified as the first argument. Their occupations are
+determined based on the temperature and Fermi level set through the command-line
+options.
 
 ```bash
 % velph transport plot eigenvalues
@@ -246,7 +249,9 @@ efficiently.
 
 #### `velph transport plot selfenergy`
 
-The following command opens a graphical window that displays Fan self-energies.
+The following command opens a graphical window to display Fan self-energies. By
+default, it uses the `transport/vaspout.h5` file unless a different file is
+specified as the first argument.
 
 ```bash
 % velph transport plot selfenergy

diff --git a/_static/documentation_options.js b/_static/documentation_options.js
@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.8.1',
+    VERSION: '0.8.2',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/changelog.html b/changelog.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Change Log &#8212; Phelel v.0.8.1</title>
+    <title>Change Log &#8212; Phelel v.0.8.2</title>
 
 
 
@@ -39,7 +39,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -124,7 +124,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">
@@ -293,6 +293,7 @@ <h2> Contents </h2>
             </div>
             <nav aria-label="Page">
                 <ul class="visible nav section-nav flex-column">
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#jan-10-2025-version-0-8-2">Jan-10-2025: Version 0.8.2</a></li>
 <li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#jan-8-2025-version-0-8-1">Jan-8-2025: Version 0.8.1</a></li>
 <li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#jan-5-2025-version-0-8-0">Jan-5-2025: Version 0.8.0</a></li>
 <li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#dec-31-2024-version-0-7-0">Dec-31-2024: Version 0.7.0</a></li>
@@ -310,6 +311,12 @@ <h2> Contents </h2>
 
   <section class="tex2jax_ignore mathjax_ignore" id="change-log">
 <span id="changelog"></span><h1>Change Log<a class="headerlink" href="#change-log" title="Link to this heading">#</a></h1>
+<section id="jan-10-2025-version-0-8-2">
+<h2>Jan-10-2025: Version 0.8.2<a class="headerlink" href="#jan-10-2025-version-0-8-2" title="Link to this heading">#</a></h2>
+<ul class="simple">
+<li><p>Collection of small updates of velph command</p></li>
+</ul>
+</section>
 <section id="jan-8-2025-version-0-8-1">
 <h2>Jan-8-2025: Version 0.8.1<a class="headerlink" href="#jan-8-2025-version-0-8-1" title="Link to this heading">#</a></h2>
 <ul class="simple">
@@ -376,6 +383,7 @@ <h2>Dec-9-2024: Version 0.6.6<a class="headerlink" href="#dec-9-2024-version-0-6
   </div>
   <nav class="bd-toc-nav page-toc">
     <ul class="visible nav section-nav flex-column">
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#jan-10-2025-version-0-8-2">Jan-10-2025: Version 0.8.2</a></li>
 <li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#jan-8-2025-version-0-8-1">Jan-8-2025: Version 0.8.1</a></li>
 <li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#jan-5-2025-version-0-8-0">Jan-5-2025: Version 0.8.0</a></li>
 <li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#dec-31-2024-version-0-7-0">Dec-31-2024: Version 0.7.0</a></li>

diff --git a/genindex.html b/genindex.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Index &#8212; Phelel v.0.8.1</title>
+    <title>Index &#8212; Phelel v.0.8.2</title>
 
 
 
@@ -38,7 +38,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -132,7 +132,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">

diff --git a/index.html b/index.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Phelel &#8212; Phelel v.0.8.1</title>
+    <title>Phelel &#8212; Phelel v.0.8.2</title>
 
 
 
@@ -39,7 +39,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -126,7 +126,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">

diff --git a/install.html b/install.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Installation &#8212; Phelel v.0.8.1</title>
+    <title>Installation &#8212; Phelel v.0.8.2</title>
 
 
 
@@ -39,7 +39,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -125,7 +125,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">

diff --git a/phelel-command.html b/phelel-command.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>phelel command &#8212; Phelel v.0.8.1</title>
+    <title>phelel command &#8212; Phelel v.0.8.2</title>
 
 
 
@@ -39,7 +39,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -125,7 +125,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">

diff --git a/reference.html b/reference.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>References &#8212; Phelel v.0.8.1</title>
+    <title>References &#8212; Phelel v.0.8.2</title>
 
 
 
@@ -39,7 +39,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -125,7 +125,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">

diff --git a/search.html b/search.html
@@ -6,7 +6,7 @@
 
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><title>Search - Phelel v.0.8.1</title>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><title>Search - Phelel v.0.8.2</title>
 
 
 
@@ -37,7 +37,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -134,7 +134,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">

diff --git a/searchindex.js b/searchindex.js
diff --git a/velph-command.html b/velph-command.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>velph command &#8212; Phelel v.0.8.1</title>
+    <title>velph command &#8212; Phelel v.0.8.2</title>
 
 
 
@@ -39,7 +39,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -133,7 +133,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">

diff --git a/velph-example.html b/velph-example.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>velph example &#8212; Phelel v.0.8.1</title>
+    <title>velph example &#8212; Phelel v.0.8.2</title>
 
 
 
@@ -39,7 +39,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -125,7 +125,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">

diff --git a/velph-init-template.html b/velph-init-template.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>velph init template &#8212; Phelel v.0.8.1</title>
+    <title>velph init template &#8212; Phelel v.0.8.2</title>
 
 
 
@@ -39,7 +39,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -125,7 +125,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">

diff --git a/velph-init.html b/velph-init.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>velph init &#8212; Phelel v.0.8.1</title>
+    <title>velph init &#8212; Phelel v.0.8.2</title>
 
 
 
@@ -39,7 +39,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=6d507e9e"></script>
+    <script src="_static/documentation_options.js?v=7a24fef8"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -125,7 +125,7 @@
 
 
 
-    <p class="title logo__title">Phelel v.0.8.1</p>
+    <p class="title logo__title">Phelel v.0.8.2</p>
 
 </a></div>
         <div class="sidebar-primary-item">