Add Continuous integration and start lesson plan #13
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# Check if the build works | |
name: Check build | |
on: | |
push: | |
pull_request: | |
schedule: | |
- cron: "0 0 1 * *" | |
jobs: | |
check_build: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: actions/setup-java@v3 | |
with: | |
distribution: 'temurin' | |
java-version: '8' | |
check-latest: true | |
- run: ./clone_repo.sh | |
- run: ./build_nft.sh | |
# 'false' means an exit code 0 | |
- run: ./has_build_failed.sh | |
- name: Clone needed repos | |
run: | | |
cd .. | |
git clone https://github.com/richelbilderbeek/launch_nft_locally_in_singularity_from_dockerfile | |
git clone https://github.com/richelbilderbeek/nextflow_troubleshooting | |
cd - | |
- name: Run NFT for a max time | |
run: timeout 10m ./run_nft.sh | |
#- uses: r-lib/actions/setup-r@v2 | |
#- name: Install dependencies | |
# run: | | |
# install.packages(c("remotes", "rcmdcheck", "stringr", "testthat")) | |
# shell: Rscript {0} | |
#- run: ./2_update_gradle.sh | |
#- run: ./3_update_gradle_build.sh | |
#- run: ./4_update_backend_dockerfile.sh | |
#- run: ./997_build.sh | |
#- run: sudo docker image ls | |
# - run: ./998_run.sh |