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Completing metadata for Kuang et al (2017)
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refs pombase/website#2296
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@PCarme
PCarme authored Jan 20, 2025
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Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions website/jbrowse_track_metadata.csv
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Expand Up @@ -336,9 +336,9 @@ Transcripts,yes,yes,Novel isoforms – Montañés et al. (2022),,,CBS5682,WT,not
Transcripts,yes,yes,Novel transcripts – Montañés et al. (2022),,,CBS5682,WT,not applicable,"YPD, standard temperature",vegetative growth,,direct RNA-seq,Montañés,2022,35618415,BioProject,PRJNA791394,,,GFF,https://www.pombase.org/external_datasets/Montañés_2022_PMID_35618415/Spom_novel_transcripts.sorted.gff.gz
Transcripts,yes,yes,5 prime UTRs – Montañés et al. (2022),,,CBS5682,WT,not applicable,"YPD, standard temperature",vegetative growth,,direct RNA-seq,Montañés,2022,35618415,BioProject,PRJNA791394,,,GFF,https://www.pombase.org/external_datasets/Montañés_2022_PMID_35618415/Spom_dRNA_5UTR_Stringtie.sorted.gff.gz
Transcripts,yes,yes,3 prime UTRs – Montañés et al. (2022),,,CBS5682,WT,not applicable,"YPD, standard temperature",vegetative growth,,direct RNA-seq,Montañés,2022,35618415,BioProject,PRJNA791394,,,GFF,https://www.pombase.org/external_datasets/Montañés_2022_PMID_35618415/Spom_dRNA_3UTR_Stringtie.sorted.gff.gz
Transcripts,yes,yes,Transcripts during meiosis (0h) - Kuang et al. (2017),,,,,,,,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103021,GSM2103027,GSM2103033",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_0.sorted.bam
Transcripts,yes,yes,Transcripts during meiosis (2h) - Kuang et al. (2017),,,,,,,,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103022,GSM2103028,GSM2103034",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_2.sorted.bam
Transcripts,yes,yes,Transcripts during meiosis (4h) - Kuang et al. (2017),,,,,,,,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103023,GSM2103029,GSM2103035",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_4.sorted.bam
Transcripts,yes,yes,Transcripts during meiosis (6h) - Kuang et al. (2017),,,,,,,,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103024,GSM2103030,GSM2103036",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_6.sorted.bam
Transcripts,yes,yes,Transcripts during meiosis (8h) - Kuang et al. (2017),,,,,,,,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103025,GSM2103031,GSM2103037",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_8.sorted.bam
Transcripts,yes,yes,Transcripts during meiosis (10h) - Kuang et al. (2017),,,,,,,,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103026,GSM2103032,GSM2103038",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_10.sorted.bam
Transcripts,yes,yes,Transcriptome during meiosis (0h) - Kuang et al. (2017),,,mat1-PΔ17/mat1-M-smt-o his2/+ leu1-32/+ ura4/+ ade6-M210/ade6-M216,WT,not applicable,"EMM, nitrogen starvation",meiosis,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103021,GSM2103027,GSM2103033",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_0.sorted.bam
Transcripts,yes,yes,Transcriptome during meiosis (2h) - Kuang et al. (2017),,,mat1-PΔ17/mat1-M-smt-o his2/+ leu1-32/+ ura4/+ ade6-M210/ade6-M216,WT,not applicable,"EMM, nitrogen starvation",meiosis,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103022,GSM2103028,GSM2103034",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_2.sorted.bam
Transcripts,yes,yes,Transcriptome during meiosis (4h) - Kuang et al. (2017),,,mat1-PΔ17/mat1-M-smt-o his2/+ leu1-32/+ ura4/+ ade6-M210/ade6-M216,WT,not applicable,"EMM, nitrogen starvation",meiosis,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103023,GSM2103029,GSM2103035",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_4.sorted.bam
Transcripts,yes,yes,Transcriptome during meiosis (6h) - Kuang et al. (2017),,,mat1-PΔ17/mat1-M-smt-o his2/+ leu1-32/+ ura4/+ ade6-M210/ade6-M216,WT,not applicable,"EMM, nitrogen starvation",meiosis,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103024,GSM2103030,GSM2103036",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_6.sorted.bam
Transcripts,yes,yes,Transcriptome during meiosis (8h) - Kuang et al. (2017),,,mat1-PΔ17/mat1-M-smt-o his2/+ leu1-32/+ ura4/+ ade6-M210/ade6-M216,WT,not applicable,"EMM, nitrogen starvation",meiosis,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103025,GSM2103031,GSM2103037",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_8.sorted.bam
Transcripts,yes,yes,Transcriptome during meiosis (10h) - Kuang et al. (2017),,,mat1-PΔ17/mat1-M-smt-o his2/+ leu1-32/+ ura4/+ ade6-M210/ade6-M216,WT,not applicable,"EMM, nitrogen starvation",meiosis,,RNA-seq,Kuang,2017,27856494,GEO,GSE79802,"GSM2103026,GSM2103032,GSM2103038",,rnaseq,https://www.pombase.org/external_datasets/Kuang_IsoSeq_2017_PMID_27856494/rep2_meiosis_hour_10.sorted.bam

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