Merge pull request #1284 from pyiron/subprocess_env_bug

Enforce environment for subprocess
pyiron · Jan 12, 2024 · bf12a95 · bf12a95
2 parents 75230b2 + 107c947
commit bf12a95
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 0 deletions.
diff --git a/pyiron_base/jobs/job/runfunction.py b/pyiron_base/jobs/job/runfunction.py
@@ -454,6 +454,7 @@ def run_job_with_runmode_srun(job):
         stdout=subprocess.PIPE,
         stderr=subprocess.STDOUT,
         universal_newlines=True,
+        env=os.environ.copy(),
     )
 
 
@@ -641,6 +642,7 @@ def execute_job_with_external_executable(job):
             stderr=subprocess.STDOUT,
             universal_newlines=True,
             check=True,
+            env=os.environ.copy(),
         ).stdout
     except subprocess.CalledProcessError as e:
         out, job_crashed = handle_failed_job(job=job, error=e)

diff --git a/pyiron_base/jobs/worker.py b/pyiron_base/jobs/worker.py
@@ -74,6 +74,7 @@ def worker_function(args):
             stdout=subprocess.DEVNULL,
             stderr=subprocess.DEVNULL,
             universal_newlines=True,
+            env=os.environ.copy(),
         )
     except subprocess.CalledProcessError:
         pass