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QuPath

Open source software for bioimage analysis
README.md

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  1. qupath qupath Public

    QuPath - Open-source bioimage analysis for research

    Java 1.1k 289

  2. qupath-docs qupath-docs Public

    QuPath documentation

    Python 19 24

  3. qupath-extension-stardist qupath-extension-stardist Public

    QuPath extension to run StarDist nucleus detection

    Java 38 7

  4. qupath-extension-djl qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    Java 6 6

  5. qupath-extension-omero-web qupath-extension-omero-web Public

    QuPath extension to work with images through OMERO's web API

    Java 9 11

  6. qupath-extension-bioimageio qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    Java 4 3

Repositories

Showing 10 of 44 repositories
  • qupath Public

    QuPath - Open-source bioimage analysis for research

    qupath/qupath’s past year of commit activity
    Java 1,124 GPL-3.0 289 39 3 Updated Mar 10, 2025
  • qupath-extension-py4j Public

    A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)

    qupath/qupath-extension-py4j’s past year of commit activity
    Java 0 Apache-2.0 1 0 0 Updated Mar 7, 2025
  • qupath-docs Public

    QuPath documentation

    qupath/qupath-docs’s past year of commit activity
    Python 19 24 6 4 Updated Mar 7, 2025
  • qupath-catalog Public

    The catalog containing the QuPath extensions developed by the QuPath team

    qupath/qupath-catalog’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Mar 4, 2025
  • qupath-extension-omero Public

    QuPath extension to work with images through OMERO's APIs

    qupath/qupath-extension-omero’s past year of commit activity
    Java 4 Apache-2.0 1 6 0 Updated Mar 4, 2025
  • qupath-extension-instanseg Public

    The official QuPath extension for InstanSeg

    qupath/qupath-extension-instanseg’s past year of commit activity
    Java 14 Apache-2.0 6 5 3 Updated Feb 26, 2025
  • extension-manager Public

    A manager for catalogs and extensions.

    qupath/extension-manager’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Feb 21, 2025
  • qupath-bioimageio-spec Public

    Support for parsing the BioImage Model Zoo spec in Java

    qupath/qupath-bioimageio-spec’s past year of commit activity
    Java 0 MIT 2 1 1 Updated Feb 19, 2025
  • qupath-extension-wsinfer Public

    QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

    qupath/qupath-extension-wsinfer’s past year of commit activity
    Java 23 Apache-2.0 8 2 1 Updated Feb 18, 2025
  • qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    qupath/qupath-extension-bioimageio’s past year of commit activity
    Java 4 Apache-2.0 3 2 0 Updated Feb 12, 2025
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