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Fix data loss when writing to pipe (reported by Jennifer Bryan, analy… #6399

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Run time

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Job	Run time
MacOS	36m 39s
Linux (gcc, debian:stable)	31m 51s
Linux (gcc, debian:testing)	33m 18s
Linux (clang, debian:stable)	33m 44s
Windows (check)	55m 15s
Linux (clang, debian:testing)	34m 29s
Windows (installer)	25m 28s
	4h 10m 44s