Data camp M2DS: single-cell type classification challenge

Starting kit for the scMARK_classification challenge: classification of cell-types with single-cell RNAseq count data.

Setup

Run the following command in your prefered local repository

git clone [email protected]:ramp-kits/scMARK_classification.git

You can download the public data via the dedicated python script to be called as follow

python download_data.py

Open the jupyter notebook scMARK_classification_starting_kit.ipynb and follow the guide !

Name	Name	Last commit message	Last commit date
Latest commit DIOUFY7 Update environment.yml (#11 ) Apr 18, 2023 c1a7d03 · Apr 18, 2023 History 20 Commits
.github/workflows	.github/workflows	first version of the scMARK challenge	Feb 15, 2023
submissions	submissions	first version of the scMARK challenge	Feb 15, 2023
.gitignore	.gitignore	first version of the scMARK challenge	Feb 15, 2023
README.md	README.md	Update README.md	Feb 15, 2023
download_data.py	download_data.py	first version of the scMARK challenge	Feb 15, 2023
environment.yml	environment.yml	Update environment.yml (#11 )	Apr 18, 2023
evry_logo.png	evry_logo.png	add evry_logo	Feb 15, 2023
extra_libraries.txt	extra_libraries.txt	first version of the scMARK challenge	Feb 15, 2023
problem.py	problem.py	Switched to unadjusted balanced accuracy score.	Feb 16, 2023
requirements.txt	requirements.txt	Update environment.yml (#11 )	Apr 18, 2023
scMARK_classification_starting_kit.ipynb	scMARK_classification_starting_kit.ipynb	better cross-val explanation	Feb 20, 2023