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Releases: refresh-bio/agc

AGC 3.1

18 Mar 16:06
c428b81
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  • Improved compression speed for gzipped input.
  • Support for ARM-based CPUs (e.g., Mac M1/M2/...).
  • Reporting reference sample name.
  • Fixed truncating .fa from gzipped input.
  • Fixed Python lib GetCtgSeq().
  • Added optional gzipping in decompression modes.
  • Small bugfixes.

AGC 3.0

23 Dec 17:33
696a170
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  • Slightly better compresion ratio.
  • New archive format (AGC 3 still can use archives produced by all previous versions) for faster queries in large datasets.
  • Bugfixes.

AGC 2.1

09 May 15:44
97a5924
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  • Bugfix for append mode. (In version 2.0, running append could produce an improper archive.)

AGC 2.0

05 Apr 17:41
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  • A bit better compression ratio
  • Improved decompression time
  • Adaptive compression mode (important for highly divergent genomes, like bacteria)
  • Added new mode: decompression of the whole collection
  • Small bug fixes

AGC 1.1

14 Jan 12:23
e0120d3
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Some small bug fixes in extraction:

  • removed unnecessary warnings,
  • removed strange coordinates in contig header.

AGC 1.0

23 Dec 16:58
f667e75
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First release of AGC