Implement pre-commit checks and format files

.clang-format

@@ -7,4 +7,4 @@ DerivePointerAlignment: false
 PointerAlignment: Left
 
 IndentWidth: 4
-ColumnLimit : 110
+ColumnLimit: 110

.cmake-format.yaml

@@ -0,0 +1,6 @@
+# https://cmake-format.readthedocs.io/en/latest/configuration.html
+
+format:
+  tab_size: 4
+  separate_ctrl_name_with_space: true
+  separate_fn_name_with_space: false

.github/workflows/validation.yml

@@ -43,6 +43,10 @@ jobs:
         with:
           cmake-flags: "-DCMAKE_INSTALL_PREFIX=${{ env.REST_PATH }} -DCMAKE_BUILD_TYPE=${{ env.CMAKE_BUILD_TYPE }} -DREST_WELCOME=ON -DRESTLIB_GEANT4=ON"
           branch: ${{ env.BRANCH_NAME }}
+      - name: Verify pre-commit config files match
+        run: |
+          cd $GITHUB_WORKSPACE
+          python ${{ env.REST_PATH }}/scripts/validatePreCommitConfig.py
       - name: Load REST libraries
         run: |
           source ${{ env.REST_PATH }}/thisREST.sh

.pre-commit-config.yaml

@@ -0,0 +1,35 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+      - id: check-added-large-files
+      - id: check-case-conflict
+      - id: check-merge-conflict
+      - id: check-symlinks
+      - id: check-yaml
+      - id: check-xml
+      - id: requirements-txt-fixer
+      - id: end-of-file-fixer
+        exclude: external/.*$
+      - id: mixed-line-ending
+        exclude: external/.*$
+      - id: trailing-whitespace
+        exclude: external/.*$
+
+  - repo: https://github.com/pre-commit/mirrors-clang-format
+    rev: v15.0.6
+    hooks:
+      - id: clang-format
+        exclude: external/.*$
+
+  - repo: https://github.com/cheshirekow/cmake-format-precommit
+    rev: v0.6.13
+    hooks:
+      - id: cmake-format
+        additional_dependencies: [ pyyaml ]
+      # - id: cmake-lint
+
+  - repo: https://github.com/psf/black
+    rev: 22.12.0
+    hooks:
+      - id: black

CMakeLists.txt

@@ -4,30 +4,29 @@ add_definitions(-DLIBRARY_VERSION="${LibraryVersion}")
 if (${REST_DECAY0} MATCHES "ON")
     add_definitions(-DUSE_Decay0)
     # TODO Issue #6 at rest-framework
-    #----------------------------------------------------------------------------
-    # Find package Decay0 and ROOT
-    # find_package(BxDecay0 1.0.9 CONFIG COMPONENTS manager REQUIRED)
+    # ----------------------------------------------------------------------------
+    # Find package Decay0 and ROOT find_package(BxDecay0 1.0.9 CONFIG COMPONENTS
+    # manager REQUIRED)
     #
-    # find_package was not working properly for me in 1.0.9. So I was using 
-    # bxdecay0-config. But in case Decay0 flag is enabled and we do not
-    # have a bxdecay0 installation we might run into problems
+    # find_package was not working properly for me in 1.0.9. So I was using
+    # bxdecay0-config. But in case Decay0 flag is enabled and we do not have a
+    # bxdecay0 installation we might run into problems
     #
 
     execute_process(
-            COMMAND bxdecay0-config --version
-            OUTPUT_VARIABLE BxDecay0_VERSION
-            OUTPUT_STRIP_TRAILING_WHITESPACE)
+        COMMAND bxdecay0-config --version
+        OUTPUT_VARIABLE BxDecay0_VERSION
+        OUTPUT_STRIP_TRAILING_WHITESPACE)
 
     execute_process(
-            COMMAND bxdecay0-config --incdir
-            OUTPUT_VARIABLE BxDecay0_INCLUDE_DIRS
-            OUTPUT_STRIP_TRAILING_WHITESPACE)
+        COMMAND bxdecay0-config --incdir
+        OUTPUT_VARIABLE BxDecay0_INCLUDE_DIRS
+        OUTPUT_STRIP_TRAILING_WHITESPACE)
 
     execute_process(
-            COMMAND bxdecay0-config --libdir
-            OUTPUT_VARIABLE BxDecay0_LIBRARY_DIRS
-            OUTPUT_STRIP_TRAILING_WHITESPACE)
-
+        COMMAND bxdecay0-config --libdir
+        OUTPUT_VARIABLE BxDecay0_LIBRARY_DIRS
+        OUTPUT_STRIP_TRAILING_WHITESPACE)
 
     if (NOT DEFINED BxDecay0_VERSION)
         message(FATAL_ERROR "bxdecay0 not found! Put its binary dir to PATH!")
@@ -41,7 +40,9 @@ if (${REST_DECAY0} MATCHES "ON")
     set(external_libs "${external_libs} -L${BxDecay0_LIBRARY_DIRS} -lBxDecay0")
 
     set(feature_added "Decay0")
-    set(feature_added ${feature_added} PARENT_SCOPE)
+    set(feature_added
+        ${feature_added}
+        PARENT_SCOPE)
 else ()
     set(REST_DECAY0 OFF)
     set(excludes ${excludes} TRestGeant4ParticleSourceDecay0)
@@ -51,13 +52,15 @@ if (NOT ${REST_EVE} MATCHES "ON")
     set(excludes ${excludes} TRestGeant4EventViewer)
 endif ()
 
-COMPILELIB("")
+compilelib("")
 
 file(GLOB_RECURSE MAC "${CMAKE_CURRENT_SOURCE_DIR}/macros/*")
-INSTALL(FILES ${MAC} DESTINATION ./macros/geant4)
+install(FILES ${MAC} DESTINATION ./macros/geant4)
 
 set(rest_macros ${rest_macros} "restGeant4_ViewEvent")
 set(rest_macros ${rest_macros} "restGeant4_ViewGeometry")
-set(rest_macros ${rest_macros} PARENT_SCOPE)
+set(rest_macros
+    ${rest_macros}
+    PARENT_SCOPE)
 
-ADD_LIBRARY_TEST()
+add_library_test()

inc/TRestGeant4ParticleSourceDecay0.h

@@ -33,4 +33,4 @@ class TRestGeant4ParticleSourceDecay0 : public TRestGeant4ParticleSource {
     ~TRestGeant4ParticleSourceDecay0() { delete fDecay0Model; }
     ClassDefOverride(TRestGeant4ParticleSourceDecay0, 1);
 };
-#endif
+#endif

macros/REST_Geant4_ListIsotopes.C

@@ -70,8 +70,8 @@ Int_t REST_Geant4_ListIsotopes(TString fName, TString fOutName) {
                             }
                         }
                         if (kaux != 1) {
-                            // cout<<"new isotope "<<event->GetTrack(i).GetParticleName()<<" in track "<<i<<"and
-                            // entry"<<n<<endl;
+                            // cout<<"new isotope "<<event->GetTrack(i).GetParticleName()<<" in track
+                            // "<<i<<"and entry"<<n<<endl;
                             isotope[k] = event->GetTrack(i).GetParticleName();
                             ni[k] = 1;
                             // cout<<"k "<<k<<" isotope "<<isotope[k]<<endl;

pipeline/clang-format/clang-format.sh

@@ -106,4 +106,3 @@ if [ "-" = "$1" ] ; then
 																																																																																																		  }"' '"${file}"'
 																																																																																																	  done
 																																																																																																  fi
-

pipeline/clang-format/clangformattest.sh

@@ -52,4 +52,3 @@ fi
 git reset HEAD --hard
 
 exit 1
-