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implement conversion fcts from R's Spectra to Python's spectrum_utils #107

implement conversion fcts from R's Spectra to Python's spectrum_utils

implement conversion fcts from R's Spectra to Python's spectrum_utils #107

Triggered via pull request February 6, 2025 16:02
@tnaaketnaake
synchronize #47
tnaake:main
Status Failure
Total duration 11m 29s
Artifacts 3

check-bioc.yml

on: pull_request
Matrix: build-check
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18 errors and 17 warnings
macOS-latest (4.4)
Running examples in ‘SpectriPy-Ex.R’ failed
macOS-latest (4.4)
BiocParallel errors
macOS-latest (4.4)
Running examples in ‘SpectriPy-Ex.R’ failed
macOS-latest (4.4)
R CMD check found ERRORs
macOS-latest (4.4)
BiocParallel errors
macOS-latest (4.4)
BiocParallel errors
macOS-latest (4.4)
Test failures
macOS-latest (4.4)
Process completed with exit code 1.
macOS-latest (4.4)
No such keg: /opt/homebrew/Cellar/[email protected]
ubuntu-latest (4.4)
Process completed with exit code 1.
windows-latest (4.4)
Running examples in 'SpectriPy-Ex.R' failed
windows-latest (4.4)
BiocParallel errors
windows-latest (4.4)
Running examples in 'SpectriPy-Ex.R' failed
windows-latest (4.4)
BiocParallel errors
windows-latest (4.4)
BiocParallel errors
windows-latest (4.4)
Test failures
windows-latest (4.4)
R CMD check found ERRORs
windows-latest (4.4)
Process completed with exit code 1.
macOS-latest (4.4)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
ubuntu-latest (4.4)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
windows-latest (4.4)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
macOS-latest (4.4)
Found the following significant warnings:
macOS-latest (4.4)
multiple methods tables found for ‘spectraVariableMapping’
macOS-latest (4.4)
See below...
macOS-latest (4.4)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
macOS-latest (4.4)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (4.4)
multiple methods tables found for ‘spectraVariableMapping’
macOS-latest (4.4)
harfbuzz 10.2.0 is already installed and up-to-date. To reinstall 10.2.0, run: brew reinstall harfbuzz
macOS-latest (4.4)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
windows-latest (4.4)
file 'SpectriPy/configure' did not have execute permissions: corrected
windows-latest (4.4)
multiple methods tables found for 'spectraVariableMapping'
windows-latest (4.4)
file 'SpectriPy/configure' did not have execute permissions: corrected
windows-latest (4.4)
Found the following significant warnings:
windows-latest (4.4)
multiple methods tables found for 'spectraVariableMapping'
windows-latest (4.4)
See below...

Artifacts

Produced during runtime
Name Size
Linux-biocversion-devel-r-devel-results
1.48 MB
Windows-biocversion-devel-r-devel-results
1.48 MB
macOS-biocversion-devel-r-devel-results
1.48 MB