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^.*\.Rproj$ | ||
^\.Rproj\.user$ | ||
^CONDUCT\.md$ | ||
README.Rmd | ||
.travis.yml | ||
appveyor.yml | ||
cran-comments.md | ||
NEWS.md | ||
man-roxygen |
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.Rproj.user | ||
.Rhistory | ||
.RData | ||
oldtravis.yml | ||
|
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language: r | ||
notifications: | ||
email: | ||
on_success: change | ||
on_failure: change |
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# Contributor Code of Conduct | ||
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||
As contributors and maintainers of this project, we pledge to respect all people who | ||
contribute through reporting issues, posting feature requests, updating documentation, | ||
submitting pull requests or patches, and other activities. | ||
|
||
We are committed to making participation in this project a harassment-free experience for | ||
everyone, regardless of level of experience, gender, gender identity and expression, | ||
sexual orientation, disability, personal appearance, body size, race, ethnicity, age, or religion. | ||
|
||
Examples of unacceptable behavior by participants include the use of sexual language or | ||
imagery, derogatory comments or personal attacks, trolling, public or private harassment, | ||
insults, or other unprofessional conduct. | ||
|
||
Project maintainers have the right and responsibility to remove, edit, or reject comments, | ||
commits, code, wiki edits, issues, and other contributions that are not aligned to this | ||
Code of Conduct. Project maintainers who do not follow the Code of Conduct may be removed | ||
from the project team. | ||
|
||
Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by | ||
opening an issue or contacting one or more of the project maintainers. | ||
|
||
This Code of Conduct is adapted from the Contributor Covenant | ||
(http:contributor-covenant.org), version 1.0.0, available at | ||
http://contributor-covenant.org/version/1/0/0/ |
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Package: rredlist | ||
Type: Package | ||
Title: IUCN Red List Client | ||
Description: IUCN Red List client. Functions for fetching data and stuff. | ||
Version: 0.0.4.9300 | ||
Authors@R: c(person("Scott", "Chamberlain", role = c("aut", "cre"), | ||
email = "[email protected]")) | ||
License: MIT + file LICENSE | ||
URL: https://github.com/ropenscilabs/rredlist | ||
BugReports: https://github.com/ropenscilabs/rredlist/issues | ||
LazyData: TRUE | ||
Imports: | ||
httr, | ||
jsonlite | ||
Suggests: | ||
testthat | ||
RoxygenNote: 5.0.1 |
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YEAR: 2015 | ||
COPYRIGHT HOLDER: Scott Chamberlain |
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# Generated by roxygen2: do not edit by hand | ||
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export(rl_common_names) | ||
export(rl_common_names_) | ||
export(rl_countries) | ||
export(rl_countries_) | ||
export(rl_habitats) | ||
export(rl_habitats_) | ||
export(rl_measures) | ||
export(rl_measures_) | ||
export(rl_narrative) | ||
export(rl_narrative_) | ||
export(rl_regions) | ||
export(rl_regions_) | ||
export(rl_search) | ||
export(rl_search_) | ||
export(rl_sp) | ||
export(rl_sp_) | ||
export(rl_sp_category) | ||
export(rl_sp_category_) | ||
export(rl_sp_citation) | ||
export(rl_sp_citation_) | ||
export(rl_sp_count) | ||
export(rl_sp_count_) | ||
export(rl_sp_country) | ||
export(rl_sp_country_) | ||
export(rl_synonyms) | ||
export(rl_synonyms_) | ||
export(rl_threats) | ||
export(rl_threats_) | ||
import(httr) | ||
import(jsonlite) |
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#' Get species narrative information by taxon name or IUCN id | ||
#' | ||
#' @export | ||
#' @param name (character) Binomial taxonomic name | ||
#' @template all | ||
#' @template info | ||
#' @examples \dontrun{ | ||
#' rl_common_names('Loxodonta africana') | ||
#' rl_common_names_('Loxodonta africana') | ||
#' } | ||
rl_common_names <- function(name = NULL, key = NULL, parse = TRUE, ...) { | ||
rl_parse(rr_GET(file.path("species/common_names", name), key, ...), parse) | ||
} | ||
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#' @export | ||
#' @rdname rl_common_names | ||
rl_common_names_ <- function(name = NULL, key = NULL, ...) { | ||
rr_GET(file.path("species/common_names", name), key, ...) | ||
} |
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#' Get countries | ||
#' | ||
#' @export | ||
#' @template all | ||
#' @template info | ||
#' @examples \dontrun{ | ||
#' rl_countries() | ||
#' rl_countries_() | ||
#' } | ||
rl_countries <- function(key = NULL, parse = FALSE, ...) { | ||
rl_parse(rr_GET("country/list", key, ...), parse) | ||
} | ||
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#' @export | ||
#' @rdname rl_countries | ||
rl_countries_ <- function(key = NULL, ...) { | ||
rr_GET("country/list", key, ...) | ||
} |
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#' Get species habitats by taxon name or IUCN id | ||
#' | ||
#' @export | ||
#' @template commonargs | ||
#' @template all | ||
#' @template info | ||
#' @examples \dontrun{ | ||
#' rl_habitats('Fratercula arctica') | ||
#' rl_habitats('Fratercula arctica', region = 'europe') | ||
#' rl_habitats(id = 12392) | ||
#' rl_habitats(id = 22694927, region = 'europe') | ||
#' | ||
#' rl_habitats_('Fratercula arctica') | ||
#' rl_habitats_(id = 12392) | ||
#' } | ||
rl_habitats <- function(name = NULL, id = NULL, region = NULL, key = NULL, parse = TRUE, ...) { | ||
rl_parse(rr_GET(.habitats(name, id, region), key, ...), parse) | ||
} | ||
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#' @export | ||
#' @rdname rl_habitats | ||
rl_habitats_ <- function(name = NULL, id = NULL, region = NULL, key = NULL, ...) { | ||
rr_GET(.habitats(name, id, region), key, ...) | ||
} | ||
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.habitats <- function(name = NULL, id = NULL, region = NULL) { | ||
stopifnot(xor(!is.null(name), !is.null(id))) | ||
path <- if (!is.null(name)) { | ||
file.path("habitats/species/name", name) | ||
} else { | ||
file.path("habitats/species/id", id) | ||
} | ||
if (!is.null(region)) { | ||
path <- file.path(path, "region", region) | ||
} | ||
path | ||
} |
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#' Get species conservation measures by taxon name or IUCN id | ||
#' | ||
#' @export | ||
#' @template commonargs | ||
#' @template all | ||
#' @template info | ||
#' @examples \dontrun{ | ||
#' rl_measures('Fratercula arctica') | ||
#' rl_measures('Fratercula arctica', region = 'europe') | ||
#' rl_measures(id = 12392) | ||
#' rl_measures(id = 22694927, region = 'europe') | ||
#' | ||
#' rl_measures_('Fratercula arctica') | ||
#' rl_measures_(id = 22694927, region = 'europe') | ||
#' } | ||
rl_measures <- function(name = NULL, id = NULL, region = NULL, key = NULL, parse = TRUE, ...) { | ||
rl_parse(rr_GET(.measures(name, id, region), key, ...), parse) | ||
} | ||
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#' @export | ||
#' @rdname rl_measures | ||
rl_measures_ <- function(name = NULL, id = NULL, region = NULL, key = NULL, ...) { | ||
rr_GET(.measures(name, id, region), key, ...) | ||
} | ||
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.measures <- function(name = NULL, id = NULL, region = NULL) { | ||
stopifnot(xor(!is.null(name), !is.null(id))) | ||
path <- if (!is.null(name)) { | ||
file.path("measures/species/name", name) | ||
} else { | ||
file.path("measures/species/id", id) | ||
} | ||
if (!is.null(region)) { | ||
path <- file.path(path, "region", region) | ||
} | ||
path | ||
} |
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#' Get species narrative information by taxon name or IUCN id | ||
#' | ||
#' @export | ||
#' @template commonargs | ||
#' @template all | ||
#' @template info | ||
#' @examples \dontrun{ | ||
#' rl_narrative('Fratercula arctica') | ||
#' rl_narrative('Fratercula arctica', region = 'europe') | ||
#' rl_narrative(id = 12392) | ||
#' rl_narrative(id = 22694927, region = 'europe') | ||
#' | ||
#' rl_narrative_('Fratercula arctica') | ||
#' rl_narrative_('Fratercula arctica', region = 'europe') | ||
#' } | ||
rl_narrative <- function(name = NULL, id = NULL, region = NULL, key = NULL, parse = TRUE, ...) { | ||
rl_parse(rr_GET(.narrative(name, id, region), key, ...), parse) | ||
} | ||
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#' @export | ||
#' @rdname rl_narrative | ||
rl_narrative_ <- function(name = NULL, id = NULL, region = NULL, key = NULL, ...) { | ||
rr_GET(.narrative(name, id, region), key, ...) | ||
} | ||
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.narrative <- function(name = NULL, id = NULL, region = NULL) { | ||
stopifnot(xor(!is.null(name), !is.null(id))) | ||
path <- if (!is.null(name)) { | ||
file.path("species/narrative", name) | ||
} else { | ||
file.path("species/narrative/id", id) | ||
} | ||
if (!is.null(region)) { | ||
path <- file.path(path, "region", region) | ||
} | ||
path | ||
} |
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#' Get regions | ||
#' | ||
#' @export | ||
#' @template all | ||
#' @template info | ||
#' @examples \dontrun{ | ||
#' rl_regions() | ||
#' rl_regions(parse = FALSE) | ||
#' rl_regions_() | ||
#' } | ||
rl_regions <- function(key = NULL, parse = TRUE, ...) { | ||
rl_parse(rr_GET("region/list", key, ...), parse) | ||
} | ||
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#' @export | ||
#' @rdname rl_regions | ||
rl_regions_ <- function(key = NULL, ...) { | ||
rr_GET("region/list", key, ...) | ||
} |
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#' Search by taxon name or IUCN id | ||
#' | ||
#' @export | ||
#' @template commonargs | ||
#' @template all | ||
#' @template info | ||
#' @examples \dontrun{ | ||
#' rl_search('Fratercula arctica') | ||
#' rl_search('Fratercula arctica', region = 'europe') | ||
#' rl_search(id = 12392) | ||
#' rl_search(id = 22694927, region = 'europe') | ||
#' | ||
#' rl_search('Fratercula arctica', parse = FALSE) | ||
#' rl_search_('Fratercula arctica') | ||
#' rl_search_('Fratercula arctica', region = 'europe') | ||
#' } | ||
rl_search <- function(name = NULL, id = NULL, region = NULL, key = NULL, parse = TRUE, ...) { | ||
rl_parse(rr_GET(.search(name, id, region), key, ...), parse) | ||
} | ||
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#' @export | ||
#' @rdname rl_search | ||
rl_search_ <- function(name = NULL, id = NULL, region = NULL, key = NULL, ...) { | ||
rr_GET(.search(name, id, region), key, ...) | ||
} | ||
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.search <- function(name = NULL, id = NULL, region = NULL) { | ||
stopifnot(xor(!is.null(name), !is.null(id))) | ||
path <- if (!is.null(name)) { | ||
file.path("species", name) | ||
} else { | ||
file.path("species/id", id) | ||
} | ||
if (!is.null(region)) { | ||
path <- file.path(path, "region", region) | ||
} | ||
path | ||
} |
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#' Get species | ||
#' | ||
#' @export | ||
#' @param page (interger) Page to get. Default: 1 | ||
#' @template all | ||
#' @examples \dontrun{ | ||
#' rl_sp(page = 1) | ||
#' rl_sp(page = 2) | ||
#' rl_sp(page = 3) | ||
#' rl_sp(page = 3, parse = FALSE) | ||
#' rl_sp_(page = 3) | ||
#' } | ||
rl_sp <- function(page, key = NULL, parse = TRUE, ...) { | ||
rl_parse(rr_GET(file.path("species/page", page), key, ...), parse) | ||
} | ||
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#' @export | ||
#' @rdname rl_sp | ||
rl_sp_ <- function(page, key = NULL, ...) { | ||
rr_GET(file.path("species/page", page), key, ...) | ||
} |
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#' Get species by category | ||
#' | ||
#' @export | ||
#' @param category (character) 2 letter category code | ||
#' @template all | ||
#' @examples \dontrun{ | ||
#' rl_sp_category('VU') | ||
#' rl_sp_category('EN') | ||
#' rl_sp_category('EX') | ||
#' rl_sp_category('EX', parse = FALSE) | ||
#' rl_sp_category_('EX') | ||
#' } | ||
rl_sp_category <- function(category, key = NULL, parse = TRUE, ...) { | ||
rl_parse(rr_GET(file.path("species/category", category), key, ...), parse) | ||
} | ||
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#' @export | ||
#' @rdname rl_sp_category | ||
rl_sp_category_ <- function(category, key = NULL, parse = TRUE, ...) { | ||
rr_GET(file.path("species/category", category), key, ...) | ||
} |
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#' Get citations | ||
#' | ||
#' @export | ||
#' @template commonargs | ||
#' @template all | ||
#' @template info | ||
#' @examples \dontrun{ | ||
#' rl_sp_citation('Balaena mysticetus') | ||
#' rl_sp_citation('Balaena mysticetus', region = 'europe') | ||
#' rl_sp_citation(id = 12392) | ||
#' | ||
#' rl_sp_citation(id = 2467, region = 'europe') | ||
#' rl_sp_citation(id = 2467, region = 'europe', parse = FALSE) | ||
#' rl_sp_citation_(id = 2467, region = 'europe') | ||
#' } | ||
rl_sp_citation <- function(name = NULL, id = NULL, region = NULL, key = NULL, parse = TRUE, ...) { | ||
rl_parse(rr_GET(.sp_citation(name, id, region), key, ...), parse) | ||
} | ||
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#' @export | ||
#' @rdname rl_sp_citation | ||
rl_sp_citation_ <- function(name = NULL, id = NULL, region = NULL, key = NULL, ...) { | ||
rr_GET(.sp_citation(name, id, region), key, ...) | ||
} | ||
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.sp_citation <- function(name = NULL, id = NULL, region = NULL) { | ||
stopifnot(xor(!is.null(name), !is.null(id))) | ||
path <- if (!is.null(name)) { | ||
file.path("species/citation", name) | ||
} else { | ||
file.path("species/citation/id", id) | ||
} | ||
if (!is.null(region)) { | ||
path <- file.path(path, "region", region) | ||
} | ||
path | ||
} |
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