fix parsing reads with 'X' or '=' instead of 'M' in cigar #28
Zilong-LiAnnotations
25 warnings
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macos-latest (release)
Undocumented code objects:
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macos-latest (release)
Undocumented arguments in Rd file 'STITCH.Rd'
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macos-latest (release)
Non-portable flags in variable 'PKG_CPPFLAGS':
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macos-latest (release)
Found the following file(s) containing GNU extensions:
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macos-latest (release)
File ‘STITCH/libs/STITCH.so’:
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macos-latest (release)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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ubuntu-latest (release)
Undocumented code objects:
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ubuntu-latest (release)
Undocumented arguments in Rd file 'STITCH.Rd'
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ubuntu-latest (release)
Non-portable flags in variable 'PKG_CPPFLAGS':
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ubuntu-latest (release)
Found the following file(s) containing GNU extensions:
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ubuntu-latest (release)
File ‘STITCH/libs/STITCH.so’:
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ubuntu-latest (release)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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ubuntu-latest (devel)
Undocumented code objects:
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ubuntu-latest (devel)
Undocumented arguments in Rd file 'STITCH.Rd'
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ubuntu-latest (devel)
Non-portable flags in variable 'PKG_CPPFLAGS':
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ubuntu-latest (devel)
Found the following file(s) containing GNU extensions:
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ubuntu-latest (devel)
File ‘STITCH/libs/STITCH.so’:
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ubuntu-latest (devel)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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windows-latest (release)
file 'STITCH/cleanup' did not have execute permissions: corrected
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windows-latest (release)
file 'STITCH/src/htslib-1.19.1/configure' did not have execute permissions: corrected
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windows-latest (release)
Undocumented code objects:
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windows-latest (release)
Undocumented arguments in Rd file 'STITCH.Rd'
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windows-latest (release)
Non-portable flags in variable 'PKG_CPPFLAGS':
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windows-latest (release)
Found the following file(s) containing GNU extensions:
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windows-latest (release)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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