version 1.7.2 #109
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| name: CI | |
| on: | |
| push: | |
| branches: [ main, master ] | |
| pull_request: | |
| branches: [ main, master ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| test-all: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: Manually install dependency | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y libdeflate-dev libdeflate-tools | |
| sudo ln -sf /usr/lib/x86_64-linux-gnu/libdeflate.so /usr/local/lib/libdeflate.so | |
| ls -lth /usr/local/ | |
| ls -lth /usr/local/lib/ | |
| ls -lth /usr/local/lib/libdeflate.so | |
| sudo apt-get install -y libcurl4-openssl-dev | |
| sudo apt-get install -y libharfbuzz-dev | |
| sudo apt-get install -y libfribidi-dev | |
| which pkg-config | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install dependencies | |
| run: ./scripts/install-dependencies.sh | |
| - name: Unit tests | |
| run: ./scripts/test-unit.sh | |
| - name: Acceptance tests | |
| run: ./scripts/test-acceptance.sh | |
| - name: Test the build | |
| run: ./scripts/build-and-install.R | |
| - name: Test the CLI | |
| run: ./scripts/test-cli.R | |
| - name: Example test | |
| run: ./scripts/test-compare-vcf.sh |