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R-CMD-check

R-CMD-check #31

Triggered via push January 7, 2025 14:56
Status Success
Total duration 7m 8s
Artifacts
Matrix: R-CMD-check
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1 error and 27 warnings
macos-latest (release)
No such keg: /opt/homebrew/Cellar/[email protected]
ubuntu-latest (release)
Undocumented code objects:
ubuntu-latest (release)
Codoc mismatches from Rd file 'STITCH.Rd':
ubuntu-latest (release)
Undocumented arguments in Rd file 'STITCH.Rd'
ubuntu-latest (release)
Non-portable flags in variable 'PKG_CPPFLAGS':
ubuntu-latest (release)
Found the following file(s) containing GNU extensions:
ubuntu-latest (release)
File ‘STITCH/libs/STITCH.so’:
macos-latest (release)
Undocumented code objects:
macos-latest (release)
Codoc mismatches from Rd file 'STITCH.Rd':
macos-latest (release)
Undocumented arguments in Rd file 'STITCH.Rd'
macos-latest (release)
Non-portable flags in variable 'PKG_CPPFLAGS':
macos-latest (release)
Found the following file(s) containing GNU extensions:
macos-latest (release)
File ‘STITCH/libs/STITCH.so’:
macos-latest (release)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
macos-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
ubuntu-latest (devel)
Undocumented code objects:
ubuntu-latest (devel)
Codoc mismatches from Rd file 'STITCH.Rd':
ubuntu-latest (devel)
Undocumented arguments in Rd file 'STITCH.Rd'
ubuntu-latest (devel)
Non-portable flags in variable 'PKG_CPPFLAGS':
ubuntu-latest (devel)
Found the following file(s) containing GNU extensions:
ubuntu-latest (devel)
File ‘STITCH/libs/STITCH.so’:
windows-latest (release)
file 'STITCH/cleanup' did not have execute permissions: corrected
windows-latest (release)
file 'STITCH/src/htslib-1.19.1/configure' did not have execute permissions: corrected
windows-latest (release)
Undocumented code objects:
windows-latest (release)
Codoc mismatches from Rd file 'STITCH.Rd':
windows-latest (release)
Undocumented arguments in Rd file 'STITCH.Rd'
windows-latest (release)
Non-portable flags in variable 'PKG_CPPFLAGS':
windows-latest (release)
Found the following file(s) containing GNU extensions: