Skip to content

Code for the population decoding of calcium fluorescence data

Notifications You must be signed in to change notification settings

sainathmurali/population-decoding

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

5 Commits
 
 
 
 

Repository files navigation

This python code is for the population decoding of task variables from calcium fluorescence (df/f) data of mice performing whisker-based tactile discrimination task recorded in multiple brain areas. Some of the details of the code are as follows:

  • The classifiers used here were Support Vector Classifier (SVC) and Linear Discriminant Analysis (LDA) from scikitlearn.
  • Moving (chunk with no overlap) window (or) cumulative (time points added cumulatively to the chunk) window was used to capture the changes in fluorescence over time.

The details of the task, recording methods and areas can be found in this paper (https://doi.org/10.1016/j.cub.2020.10.059). The data and the code of the single-neuron level analysis done in the paper can be found here (https://doi.org/10.25377/sussex.12573881).

About

Code for the population decoding of calcium fluorescence data

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages