Delete devel branch #10
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| name: Build & test plugin on Pull Request | |
| on: | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Free Disk Space (Ubuntu only) | |
| uses: jlumbroso/free-disk-space@main | |
| - name: Set up MPI | |
| uses: mpi4py/setup-mpi@master | |
| with: | |
| mpi: 'openmpi' | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y wget gcc-10 g++-10 make cmake | |
| - name: Install Miniconda | |
| uses: conda-incubator/setup-miniconda@main | |
| with: | |
| miniconda-version: "latest" | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| activate-environment: scipion3 | |
| python-version: "3.8" | |
| - uses: Jimver/[email protected] | |
| id: cuda-toolkit | |
| with: | |
| cuda: '11.7.0' | |
| linux-local-args: '[ "--toolkit" ]' | |
| - name: Install Scipion | |
| working-directory: ${{ github.workspace }}/../ | |
| run: | | |
| pip cache purge | |
| pip install --user scipion-installer | |
| python3 -m scipioninstaller -conda -noXmipp -noAsk scipion | |
| # Checkout to Pull Request branch if exists, by default stays in devel | |
| - name: Install scipion-chem (in branch ${{ github.head_ref }} if exists) | |
| working-directory: ${{ github.workspace }}/../ | |
| env: | |
| REPO_NAME: scipion-chem | |
| BRANCH_NAME: ${{ github.head_ref }} | |
| run: | | |
| git clone https://github.com/scipion-chem/$REPO_NAME.git | |
| if [ $(git ls-remote --heads https://github.com/scipion-chem/$REPO_NAME.git $BRANCH_NAME | wc -l) -eq 1 ]; then | |
| cd $REPO_NAME && git checkout $BRANCH_NAME && cd - | |
| fi | |
| scipion/scipion3 installp -p $REPO_NAME --devel | |
| - name: Checkout repository | |
| uses: actions/checkout@main | |
| with: | |
| ref: ${{ github.head_ref }} | |
| - name: Install plugin from pull request | |
| working-directory: ${{ github.workspace }} | |
| run: | | |
| pip cache purge | |
| ../scipion/scipion3 installp -p . --devel | |
| - name: Run tests | |
| working-directory: ${{ github.workspace }}/${{ vars.FOLDER_WITH_VERSION }} | |
| run: | | |
| wget https://raw.githubusercontent.com/scipion-chem/scipion-chem/devel/pwchem/runTests.py | |
| python runTests.py ${{ github.workspace }}/../scipion/scipion3 ${{ vars.FOLDER_WITH_VERSION }} -noGPU -testData=testData.json |