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Less hacky plotting classes #3209

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1e0d310
Fix *Plot.style() methods
flying-sheep Aug 12, 2024
49446c2
relnote
flying-sheep Aug 12, 2024
73a852f
Fix rank_genes_groups_violin
flying-sheep Aug 12, 2024
edddf35
WIP less hacky plotting classes
flying-sheep Aug 13, 2024
a5b13a5
dotplot cleaned up
flying-sheep Aug 13, 2024
a840104
WIP stacked violin
flying-sheep Aug 13, 2024
85bbc86
matrixplot converted
flying-sheep Aug 14, 2024
f981f7b
Fix kwds
flying-sheep Aug 14, 2024
ba000a6
centralize dendrogram
flying-sheep Aug 14, 2024
04b6ca9
centralize swap_axes
flying-sheep Aug 14, 2024
1515309
make it work
flying-sheep Aug 15, 2024
9812a7e
Merge branch 'main' into fix-style
flying-sheep Sep 5, 2024
190e25d
Merge branch 'main' into fix-style
flying-sheep Sep 19, 2024
bba9f70
Merge branch 'fix-style' into unhack-plotting
flying-sheep Sep 19, 2024
5f91dbc
Fix post_init
flying-sheep Sep 19, 2024
ba697dd
KW_ONLY
flying-sheep Sep 19, 2024
7f44bfe
add test
flying-sheep Sep 19, 2024
7ab94a3
Merge branch 'fix-style' into unhack-plotting
flying-sheep Sep 19, 2024
d27dcad
Document all Nones
flying-sheep Sep 19, 2024
4d5b43d
Merge branch 'fix-style' into unhack-plotting
flying-sheep Sep 19, 2024
578e572
fix main function parameters
flying-sheep Sep 19, 2024
f7405aa
correct types for dendrogram[_key]
flying-sheep Sep 19, 2024
5e0b727
Merge branch 'fix-style' into unhack-plotting
flying-sheep Sep 20, 2024
e77b497
Fix deprecation
flying-sheep Sep 20, 2024
e62b0b1
unify categories_order
flying-sheep Sep 20, 2024
55d8b61
Fix stacked_violin’s `standard_scale` parameter (#3243)
flying-sheep Sep 20, 2024
3b40cb2
standard_scale type
flying-sheep Sep 20, 2024
874655c
Merge branch 'main' into fix-style
ilan-gold Sep 20, 2024
a666276
Merge branch 'main' into fix-style
flying-sheep Sep 20, 2024
33bdb2f
Merge branch 'main' into fix-style
flying-sheep Sep 20, 2024
e4c45ed
Merge branch 'main' into fix-style
flying-sheep Sep 20, 2024
2d09909
oops
flying-sheep Sep 20, 2024
e68143d
Merge branch 'main' into fix-style
flying-sheep Sep 20, 2024
fe1ab42
fix type
flying-sheep Sep 20, 2024
8db624d
Merge branch 'fix-style' into unhack-plotting
flying-sheep Sep 20, 2024
66c51ad
Merge branch 'main' into unhack-plotting
flying-sheep Sep 20, 2024
297ed30
fix cmap type
flying-sheep Sep 20, 2024
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4 changes: 3 additions & 1 deletion src/scanpy/external/pl.py
Original file line number Diff line number Diff line change
Expand Up @@ -25,6 +25,8 @@
from collections.abc import Collection
from typing import Any

from matplotlib.colors import Colormap


__all__ = [
"phate",
Expand Down Expand Up @@ -166,7 +168,7 @@ def sam(
projection: str | np.ndarray = "X_umap",
*,
c: str | np.ndarray | None = None,
cmap: str = "Spectral_r",
cmap: Colormap | str | None = "Spectral_r",
linewidth: float = 0.0,
edgecolor: str = "k",
axes: Axes | None = None,
Expand Down
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