Landingpage without screenshots #160
Workflow file for this run
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| name: Lint | |
| on: | |
| pull_request_target: | |
| concurrency: | |
| group: lint-${{ github.event.pull_request.number }} | |
| cancel-in-progress: true | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| jobs: | |
| auto-lint: | |
| name: Formatting and Style | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 15 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| token: ${{ secrets.SEQAN_ACTIONS_PAT }} | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: lint | |
| auto-activate-base: false | |
| auto-update-conda: false | |
| channels: conda-forge | |
| channel-priority: strict | |
| environment-file: workflow/envs/lint.yml | |
| miniforge-version: latest | |
| use-mamba: true | |
| - name: Run isort | |
| run: isort . | |
| - name: Run black | |
| run: black . | |
| - name: Run snakefmt | |
| run: snakefmt . | |
| - name: Import GPG key | |
| uses: crazy-max/ghaction-import-gpg@v6 | |
| with: | |
| gpg_private_key: ${{ secrets.SEQAN_ACTIONS_GPG_KEY }} | |
| passphrase: ${{ secrets.SEQAN_ACTIONS_GPG_PASSPHRASE }} | |
| git_user_signingkey: true | |
| git_commit_gpgsign: true | |
| - name: Commit changes | |
| id: commit | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| add: . | |
| author_name: seqan-actions[bot] | |
| author_email: [email protected] | |
| message: '[MISC] automatic linting' | |
| # Wait for new commit to start new workflow run such that this run is cancelled. | |
| # Useful for auto-merge on success of all workflows. | |
| - name: Wait | |
| if: steps.commit.outputs.committed == 'true' | |
| run: sleep 60 | |
| # Otherwise, continue. | |
| - name: Run pylint | |
| if: steps.commit.outputs.committed == 'false' | |
| run: pylint . |