[DOC] Add short README #109
Workflow file for this run
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| name: Test | |
| on: | |
| pull_request: | |
| concurrency: | |
| group: test-${{ github.event.pull_request.number }} | |
| cancel-in-progress: true | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| jobs: | |
| build-html: | |
| name: build | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: snakemake | |
| auto-activate-base: false | |
| auto-update-conda: false | |
| channels: conda-forge | |
| channel-priority: strict | |
| environment-file: workflow/envs/snakemake.yml | |
| miniforge-version: latest | |
| use-mamba: true | |
| - name: Extract data | |
| run: | | |
| mkdir -p ${{ github.workspace }}/results | |
| tar xf ${{ github.workspace }}/.github/data/data.tar.zst -C ${{ github.workspace }}/results | |
| - name: Run snakemake | |
| run: snakemake --use-conda --conda-frontend mamba --cores 2 |