Advanced Mode #143
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Lint | |
| on: | |
| pull_request_target: | |
| concurrency: | |
| group: lint-${{ github.event.pull_request.number }} | |
| cancel-in-progress: true | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| jobs: | |
| auto-lint: | |
| name: Formatting | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 15 | |
| outputs: | |
| has_changes: ${{ steps.commit.outputs.committed }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| token: ${{ secrets.SEQAN_ACTIONS_PAT }} | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: snakemake | |
| auto-activate-base: false | |
| auto-update-conda: false | |
| channel-priority: strict | |
| environment-file: environment.yml | |
| miniforge-version: latest | |
| - name: Run isort | |
| run: isort . | |
| - name: Run black | |
| run: black . | |
| - name: Run snakefmt | |
| run: snakefmt . | |
| - name: Import GPG key | |
| uses: crazy-max/ghaction-import-gpg@v6 | |
| with: | |
| gpg_private_key: ${{ secrets.SEQAN_ACTIONS_GPG_KEY }} | |
| passphrase: ${{ secrets.SEQAN_ACTIONS_GPG_PASSPHRASE }} | |
| git_user_signingkey: true | |
| git_commit_gpgsign: true | |
| - name: Commit changes | |
| id: commit | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| add: . | |
| author_name: seqan-actions[bot] | |
| author_email: [email protected] | |
| message: '[MISC] automatic linting' | |
| lint: | |
| needs: auto-lint | |
| if: needs.auto-lint.outputs.has_changes == 'false' | |
| name: Style Guide | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 15 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: snakemake | |
| auto-activate-base: false | |
| auto-update-conda: false | |
| channel-priority: strict | |
| environment-file: environment.yml | |
| miniforge-version: latest | |
| - name: Run pylint | |
| run: pylint . | |