[FEATURE] Advanced Mode #146
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Lint | |
| on: | |
| pull_request_target: | |
| concurrency: | |
| group: lint-${{ github.event.pull_request.number }} | |
| cancel-in-progress: true | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| jobs: | |
| auto-lint: | |
| name: Formatting and Style | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 15 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| token: ${{ secrets.SEQAN_ACTIONS_PAT }} | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: lint | |
| auto-activate-base: false | |
| auto-update-conda: false | |
| channels: conda-forge | |
| channel-priority: strict | |
| environment-file: workflow/envs/lint.yml | |
| miniforge-version: latest | |
| use-mamba: true | |
| - name: Run isort | |
| run: isort . | |
| - name: Run black | |
| run: black . | |
| - name: Run snakefmt | |
| run: snakefmt . | |
| - name: Import GPG key | |
| uses: crazy-max/ghaction-import-gpg@v6 | |
| with: | |
| gpg_private_key: ${{ secrets.SEQAN_ACTIONS_GPG_KEY }} | |
| passphrase: ${{ secrets.SEQAN_ACTIONS_GPG_PASSPHRASE }} | |
| git_user_signingkey: true | |
| git_commit_gpgsign: true | |
| - name: Commit changes | |
| id: commit | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| add: . | |
| author_name: seqan-actions[bot] | |
| author_email: [email protected] | |
| message: '[MISC] automatic linting' | |
| # Wait for new commit to start new workflow run such that this run is cancelled. | |
| # Useful for auto-merge on success of all workflows. | |
| - name: Wait | |
| if: steps.commit.outputs.committed == 'true' | |
| run: sleep 60 | |
| # Otherwise, continue. | |
| - name: Run pylint | |
| if: steps.commit.outputs.committed == 'false' | |
| run: pylint . |